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[173848_s_at] TPR domain

Description AV191540 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C56C10.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV191540 /WB_GENE_ID=C56C10.10 /WP=CE02564 /CHR=2 /FEA=Genomic Cluster /DEF=TPR domain; Caenorhabditis elegans cDNA clone:yk595b1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_high_8_8 > 10      6grp_highest_nonorm > 91      6grp_total > 67      4grp_total > 22      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 187.4
(3)
P 		181.6
(2.6)
P 		109.4
(-3)
A 		175.2
(2.1)
P 		78
B 207.5
(3)
P 		134.8
(-3)
P 		139.9
(-2.6)
P 		190.5
(1.6)
P 		73
C 216.5
(0.7)
P 		155
(-2.3)
P 		140.2
(-3)
P 		264
(3)
P 		124
avr 203.8
(2.5) 		157.1
(-1) 		129.8
(-3) 		209.9
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 209.6
(-2.8)
P 		210.2
(-2.8)
P 		215.1
(-2.5)
P 		305
(3)
P 		207
(-3)
P 		232.3
(-1.5)
P 		98
B 195.1
(-0.9)
P 		197.3
(-0.7)
P 		232.9
(2.2)
P 		168.4
(-3)
P 		243.5
(3)
P 		221.3
(1.2)
P 		75
C 267.7
(1.3)
P 		251.4
(0.3)
P 		245.8
(-0.1)
P 		197.5
(-3)
P 		210.4
(-2.2)
P 		296
(3)
P 		99
avr 224.1
(-2.1) 		219.6
(-3) 		231.3
(-0.7) 		223.6
(-2.2) 		220.3
(-2.9) 		249.9
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 68.2
(3)
P 		39.4
(-1.1)
P 		28.6
(-2.6)
A 		25.7
(-3)
P 		43
B 66.2
(3)
P 		33.3
(-2.8)
P 		32.4
(-3)
P 		40.6
(-1.5)
P 		34
C 71.7
(3)
P 		44.6
(-3)
P 		48.9
(-2)
P 		44.5
(-3)
P 		27
avr 68.7
(3) 		39.1
(-2.5) 		36.6
(-3) 		36.9
(-2.9) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 38.6
(-3)
P 		74.8
(2.6)
P 		46.8
(-1.7)
P 		77.4
(3)
P 		62.5
(0.7)
P 		56.5
(-0.2)
P 		39
B 67.9
(-0.4)
P 		65.7
(-0.7)
P 		56.6
(-1.7)
P 		44.6
(-3)
P 		98.9
(3)
P 		82.5
(1.2)
P 		54
C 99.2
(3)
P 		76.7
(0.7)
P 		62.6
(-0.7)
P 		39.7
(-3)
P 		68.1
(-0.1)
P 		99.1
(3)
P 		60
avr 68.6
(0.5) 		72.4
(1.4) 		55.3
(-2.7) 		53.9
(-3) 		76.5
(2.3) 		79.4
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173848_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23775
Sequence Type Exemplar sequence
Representative Public ID AV191540 NCBI
Target Description AV191540 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C56C10.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV191540 /WB_GENE_ID=C56C10.10 /WP=CE02564 /CHR=2 /FEA=Genomic Cluster /DEF=TPR domain; Caenorhabditis elegans cDNA clone:yk595b1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062938 NCBI Caenorhabditis elegans C56C10.10 (C56C10.10) mRNA, complete cds. 11/11 A 
SNAP00000022067 ENSEMBL cdna:SNAP chromosome:CEL140:II:6592531:6594195:-1 11/11 None
GENEFINDER00000022076 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6592531:6594195:-1 11/11 None
C56C10.10 ENSEMBL cdna:known chromosome:CEL140:II:6592447:6594195:-1 gene:C56C10.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6592528-6594193(-) 100.0 100.0
Public Domain and Genome References
Gene Title TPR domain
Ensembl C56C10.10
Entrez Gene 174092 Entrez gene
SwissProt Q18888 EMBL-EBI
WormBase CE02564 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588958_AT similar to aryl-hydrocarbon receptor-interacting protein cfa
CANINE_2:CFAAFFX.17910.1.S1_AT similar to aryl-hydrocarbon receptor-interacting protein cfa
CANINE_2:CFAAFFX.17910.1.S1_S_AT similar to aryl-hydrocarbon receptor-interacting protein cfa
DROSOPHILA_2:1634000_A_AT dm
DROSGENOME1:153402_AT dm
CHICKEN:GGA.4893.1.S1_AT aryl hydrocarbon receptor interacting protein gga
HG-U133A:201782_S_AT aryl hydrocarbon receptor interacting protein hs
HG-U133_PLUS_2:201782_S_AT aryl hydrocarbon receptor interacting protein hs
HG-U133A_2:201782_S_AT aryl hydrocarbon receptor interacting protein hs
HG-U95AV2:36586_AT aryl hydrocarbon receptor interacting protein hs
HUGENEFL:U78521_AT aryl hydrocarbon receptor interacting protein hs
U133_X3P:HS.75305.0.S1_3P_A_AT aryl hydrocarbon receptor interacting protein hs
HG-U133A_2:201781_S_AT aryl hydrocarbon receptor interacting protein hs
HG-FOCUS:201781_S_AT aryl hydrocarbon receptor interacting protein hs
HG-U133_PLUS_2:201781_S_AT aryl hydrocarbon receptor interacting protein hs
HG-U133A:201781_S_AT aryl hydrocarbon receptor interacting protein hs
HU35KSUBB:RC_R45970_AT Aryl hydrocarbon receptor interacting protein hs
MG-U74AV2:92575_AT aryl-hydrocarbon receptor-interacting protein mm
MU11KSUBA:U85489_S_AT aryl-hydrocarbon receptor-interacting protein mm
MOE430A:1423128_AT aryl-hydrocarbon receptor-interacting protein mm
MOUSE430A_2:1423128_AT aryl-hydrocarbon receptor-interacting protein mm
MOUSE430_2:1423128_AT aryl-hydrocarbon receptor-interacting protein mm
MG-U74CV2:134851_AT Aryl-hydrocarbon receptor-interacting protein (Aip), mRNA mm
RG-U34B:RC_AA963337_AT aryl-hydrocarbon receptor-interacting protein rn
RG-U34C:RC_AI234785_AT aryl-hydrocarbon receptor-interacting protein rn
RAE230A:1388922_AT aryl-hydrocarbon receptor-interacting protein rn
RAT230_2:1388922_AT aryl-hydrocarbon receptor-interacting protein rn
Protein Similarities
Method ID Description E-Value
blast AAA68778 Hypothetical protein C56C10.10 [Caenorhabditis elegans] ref|NP_495339.1| C56C10.10 [Caenorhabditis elegans] 0.0
blast CAE60664 Hypothetical protein CBG04317 [Caenorhabditis briggsae] 1.0E-171
blast CAE60664 Hypothetical protein CBG04317 [Caenorhabditis briggsae] 1.0E-169
blast NP_989800 aryl hydrocarbon receptor interacting protein [Gallus gallus] gb|AAQ17067.1| aryl-hydrocarbon receptor-interacting protein [Gallus gallus] 3.0E-51
Sequence
Target Sequence 
>C. ELEGANS:173848_S_AT
aactcacatgtgcgcagctagtatagctcaaggaactggatatgaagaactcgacgaatt
gatgaaaaatccacgacctcttcgatttgtatttcatcttcttcaagtctttgaaccaga
tcaatatgtacatgattcgtggcaattagatgaagatgataaactgaaatctgttgaagc
tcttcgacaaaaaggaaatgaactatttgtacagaaagattataaagaagccattgatgc
gtatcgagatgctcttactcgactggatactttaattcttcgtgaaaagccaggagaacc
agaatgggttgaacttgatagaaagaatattcccttgtacgcaaacatgtcccaatgtta
cttgaatattggagatcttcacgaagccgaagaaacctcaagtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCACATGTGCGCAGCTAGTATA 200 141 412 Antisense
GATGAAAAATCCACGACCTCTTCGA 494 407 472 Antisense
ACGACCTCTTCGATTTGTATTTCAT 529 91 484 Antisense
CTGAAATCTGTTGAAGCTCTTCGAC 204 239 575 Antisense
GCCATTGATGCGTATCGAGATGCTC 521 281 641 Antisense
AGATGCTCTTACTCGACTGGATACT 109 67 658 Antisense
GACTGGATACTTTAATTCTTCGTGA 116 377 672 Antisense
TCCCTTGTACGCAAACATGTCCCAA 272 597 742 Antisense
CATGTCCCAATGTTACTTGAATATT 15 211 757 Antisense
GAATATTGGAGATCTTCACGAAGCC 526 325 775 Antisense
ACGAAGCCGAAGAAACCTCAAGTGA 392 91 792 Antisense
Sequence Source Affymetrix Proprietary Database