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[173847_s_at] myo-inositol-1-monophosphatase

Description CEC1251 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F13G3.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C09125 /WB_GENE_ID=F13G3.5 /WP=CE05617 /CHR=1 /FEA=Genomic Cluster /DEF=myo-inositol-1-monophosphatase; C.elegans cDNA clone yk156f9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 50      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 35      6grp_total > 51      4grp_total > 59      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1578
1 2 3 4 range
A 2904.5
(-0.2)
P 		3702.9
(3)
P 		3101
(0.6)
P 		2184.7
(-3)
P 		1518
B 2980.3
(0.7)
P 		3322.8
(2.5)
P 		3415.8
(3)
P 		2293.5
(-3)
P 		1122
C 3033.1
(2.3)
P 		3028.9
(2.3)
P 		3143.9
(3)
P 		2124.5
(-3)
P 		1019
avr 2972.6
(1) 		3351.5
(3) 		3220.2
(2.3) 		2200.9
(-3) 		1151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1685
1 2 3 4 5 6 range
A 3139
(-0.4)
P 		3552.7
(1.6)
P 		3852.9
(3)
P 		3793.9
(2.7)
P 		2619.6
(-2.8)
P 		2582.9
(-3)
P 		1270
B 3069.6
(-0.3)
P 		2972.5
(-0.7)
P 		3800.1
(3)
P 		3565.1
(1.9)
P 		2898.9
(-1.1)
P 		2473
(-3)
P 		1327
C 2983.9
(-2.2)
P 		3033
(-2)
P 		3915.5
(1.9)
P 		4158.4
(3)
P 		2808.1
(-3)
P 		2985.8
(-2.2)
P 		1350
avr 3064.2
(-1) 		3186.1
(-0.4) 		3856.2
(3) 		3839.1
(2.9) 		2775.5
(-2.5) 		2680.6
(-3) 		1176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 776
1 2 3 4 range
A 1057.5
(3)
P 		803.8
(0.9)
P 		810.7
(1)
P 		319.8
(-3)
P 		738
B 950.4
(3)
P 		820.7
(1.3)
P 		791.5
(0.9)
P 		488.7
(-3)
P 		462
C 1004
(2.3)
P 		870.8
(1.2)
P 		1095.7
(3)
P 		358.2
(-3)
P 		738
avr 1004
(3) 		831.8
(1.3) 		899.3
(2) 		388.9
(-3) 		615

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 685
1 2 3 4 5 6 range
A 578.7
(-3)
P 		1263.5
(3)
P 		839.1
(-0.7)
P 		962.2
(0.4)
P 		790.5
(-1.1)
P 		628.9
(-2.6)
P 		685
B 1068.1
(0.4)
P 		989.4
(-1.4)
P 		922.8
(-3)
P 		944.3
(-2.5)
P 		1177.8
(3)
P 		922.2
(-3)
P 		256
C 1106
(3)
P 		925.4
(-1)
P 		996.6
(0.6)
P 		836.3
(-3)
P 		908.7
(-1.4)
P 		999.5
(0.6)
P 		270
avr 917.6
(-1.1) 		1059.4
(3) 		919.5
(-1) 		914.3
(-1.2) 		959
(0.1) 		850.2
(-3) 		209
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173847_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22723
Sequence Type Exemplar sequence
Representative Public ID CEC1251 NCBI
Target Description CEC1251 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F13G3.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C09125 /WB_GENE_ID=F13G3.5 /WP=CE05617 /CHR=1 /FEA=Genomic Cluster /DEF=myo-inositol-1-monophosphatase; C.elegans cDNA clone yk156f9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059663(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059663 NCBI Caenorhabditis elegans F13G3.5 (myo-inositol-1-monophosphatase) mRNA, complete cds. 11/11 None
GENEFINDER00000006949 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7309296:7312817:-1 11/11 None
F13G3.5.2 ENSEMBL cdna:known chromosome:CEL140:I:7309162:7311357:-1 gene:F13G3.5 11/11 None
F13G3.5.1 ENSEMBL cdna:known chromosome:CEL140:I:7309162:7311099:-1 gene:F13G3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006939 7/11 Cross Hyb Matching Probes None
SNAP00000006940 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7309134-7311317(-) 100.0 100.0
Public Domain and Genome References
Gene Title myo-inositol-1-monophosphatase
Ensembl F13G3.5
Entrez Gene 172477 Entrez gene
SwissProt Q19420 EMBL-EBI
WormBase CE29761 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624975_AT dm
DROSGENOME1:148838_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4437 inositol or phosphatidylinositol phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95792 Hypothetical protein F13G3.6 [Caenorhabditis elegans] ref|NP_492065.1| F13G3.6 [Caenorhabditis elegans] 0.0
blast CAE74211 Hypothetical protein CBG21893 [Caenorhabditis briggsae] 1.0E-177
blast Q19420 Probable inositol monophosphatase (IMPase) (IMP) (Inositol-1(or 4)-monophosphatase) 1.0E-160
blast CAA95791 Hypothetical protein F13G3.5 [Caenorhabditis elegans] ref|NP_492064.2| F13G3.5 [Caenorhabditis elegans] 1.0E-117
blast Q19420 Probable inositol monophosphatase (IMPase) (IMP) (Inositol-1(or 4)-monophosphatase) 1.0E-108
blast CAE74212 Hypothetical protein CBG21894 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR000760 EMBL-EBI Inositol monophosphatase 1.6E-65
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 3.9E-31
Pfam IPR000760 EMBL-EBI Inositol monophosphatase 3.4E-99
Sequence
Target Sequence 
>C. ELEGANS:173847_S_AT
agaatccctatgatcgcaatctgcgttggacttgcaatcaaaaaacaaattcgtgctgga
atcgtatacaatccaatcactaatgaactttatctcgctcaactcggaaagggagctttc
aaaaatggatttccaatccgagcatcaaagaatcaagtgctttcaaagggagttctctgt
caatctctcggtctgcataatcgtgttcagttcggcgatcgctggctcgacattgcccag
tcaaacatgcgaaatcaagtgatggctgggacaccgttcgtttggctccgcgcgatcaac
atggtgatggttgcacaaggaagttgcgatggatatgttgaatacgggattcacgcttgg
gatgttgctgctccttctatcattgtcacagaagccggaggtgttgtcactgatccaact
ggatccccatttgacgtcatgtcaagaaaagttctctgcgctggaacagctgaactcgga
cgcgatttatctgcatgcctcactcatgtcgatttcgagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATCCCTATGATCGCAATCTGCG 700 73 509 Antisense
GTCAATCTCTCGGTCTGCATAATCG 680 463 687 Antisense
AATCGTGTTCAGTTCGGCGATCGCT 199 167 707 Antisense
TCGACATTGCCCAGTCAAACATGCG 324 601 735 Antisense
ATTCACGCTTGGGATGTTGCTGCTC 666 9 857 Antisense
CTGCTCCTTCTATCATTGTCACAGA 594 237 876 Antisense
GCCGGAGGTGTTGTCACTGATCCAA 328 283 902 Antisense
ATCCAACTGGATCCCCATTTGACGT 265 39 921 Antisense
CGCTGGAACAGCTGAACTCGGACGC 533 251 967 Antisense
CTCGGACGCGATTTATCTGCATGCC 37 233 983 Antisense
GCCTCACTCATGTCGATTTCGAGCC 683 281 1005 Antisense
Sequence Source Affymetrix Proprietary Database