[Home] | [Total List]

[173845_at] DNAJ protein

Description AV189625 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T24H10.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV189625 /WB_GENE_ID=T24H10.3 /WP=CE03728 /CHR=2 /FEA=Genomic Cluster /DEF=DNAJ protein; Caenorhabditis elegans cDNA clone:yk538f1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 36      4grp_high_8_8 > 08      6grp_highest_nonorm > 81      6grp_total > 38      4grp_total > 15      6grp_highest_sub > Cu      6grp_cgc > 19      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 357.7
(3)
P 		193.1
(-3)
P 		288.7
(0.5)
P 		204.3
(-2.6)
P 		165
B 123.9
(-3)
P 		170.8
(0.9)
P 		161.2
(0.1)
P 		195.8
(3)
P 		72
C 257.7
(1)
P 		226.7
(-1.1)
P 		197.4
(-3)
P 		288.4
(3)
P 		91
avr 246.4
(3) 		196.9
(-3) 		215.8
(-0.7) 		229.5
(1) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 221.4
(-0.6)
P 		268
(1)
P 		149.7
(-3)
P 		167.2
(-2.4)
P 		215.8
(-0.8)
P 		328.3
(3)
P 		179
B 364.2
(1.8)
P 		421.7
(3)
P 		138.5
(-3)
P 		225.4
(-1.2)
P 		194.9
(-1.8)
P 		366.8
(1.8)
P 		283
C 287.1
(3)
P 		231.2
(0.5)
P 		151
(-3)
P 		247.3
(1.2)
P 		243.3
(1.1)
P 		236.8
(0.8)
P 		136
avr 290.9
(2.3) 		307
(2.9) 		146.4
(-3) 		213.3
(-0.6) 		218
(-0.4) 		310.6
(3) 		164
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 130.2
(3)
P 		41.9
(-2.3)
P 		75.5
(-0.3)
P 		29.9
(-3)
P 		100
B 39.5
(-0.4)
P 		42.2
(3)
P 		37.4
(-3)
P 		41.7
(2.4)
P 		5
C 85.3
(3)
P 		65.2
(-0.3)
P 		68.8
(0.3)
P 		48.6
(-3)
P 		37
avr 85
(3) 		49.8
(-1.7) 		60.6
(-0.3) 		40.1
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 40.8
(-2.2)
P 		95.3
(3)
P 		32.6
(-3)
P 		42.4
(-2.1)
P 		65.1
(0.1)
P 		79.9
(1.5)
P 		63
B 126.7
(2.2)
P 		140.4
(3)
P 		33.6
(-3)
P 		59.7
(-1.5)
P 		79.2
(-0.4)
P 		136.8
(2.8)
P 		107
C 106.4
(3)
P 		70.6
(-0.2)
P 		38.4
(-3)
P 		49.7
(-2)
P 		78.7
(0.6)
P 		79.3
(0.6)
P 		68
avr 91.3
(2) 		102.1
(3) 		34.9
(-3) 		50.6
(-1.6) 		74.3
(0.5) 		98.7
(2.7) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173845_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23278
Sequence Type Exemplar sequence
Representative Public ID AV189625 NCBI
Target Description AV189625 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T24H10.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV189625 /WB_GENE_ID=T24H10.3 /WP=CE03728 /CHR=2 /FEA=Genomic Cluster /DEF=DNAJ protein; Caenorhabditis elegans cDNA clone:yk538f1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063543(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063543 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-23) (dnj-23) mRNA, complete cds. 11/11 None
T24H10.3 ENSEMBL cdna:known chromosome:CEL140:II:9107316:9108459:-1 gene:T24H10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9107323-9108455(-) 100.0 100.0
Public Domain and Genome References
Gene Title DNAJ protein
Gene Symbol dnj-23
Ensembl T24H10.3
Entrez Gene 174451 Entrez gene
SwissProt Q22751 EMBL-EBI
WormBase CE03728 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256320_AT DNAJ heat shock N-terminal domain-containing protein at
CANINE:1588559_AT similar to DnaJ homolog, subfamily C, member 9 cfa
CANINE_2:CFA.10533.1.S1_AT similar to DnaJ homolog, subfamily C, member 9 cfa
CANINE_2:CFAAFFX.22584.1.S1_S_AT similar to DnaJ homolog, subfamily C, member 9 cfa
DROSOPHILA_2:1624858_AT dm
DROSGENOME1:153550_AT dm
CHICKEN:GGA.2309.1.S1_AT DnaJ (Hsp40) homolog, subfamily C, member 9 gga
CHICKEN:GGA.2309.2.A1_S_AT DnaJ (Hsp40) homolog, subfamily C, member 9 gga
CHICKEN:GGAAFFX.1758.1.S1_S_AT DnaJ (Hsp40) homolog, subfamily C, member 9 gga
HU35KSUBA:W28362_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
U133_X3P:HS.44131.2.A2_3P_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
U133_X3P:HS.44131.2.A1_3P_S_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
HG-U133A_2:213088_S_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
HG-U133_PLUS_2:213088_S_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
HG-U133A:213088_S_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
HG-U133A_2:213092_X_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
HG-U133_PLUS_2:213092_X_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
HG-U133A:213092_X_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
HG-U95AV2:41569_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
HG-U133_PLUS_2:237998_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
HG-U133B:237998_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
HG-U95B:47340_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
HG-U95C:62584_R_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
HU35KSUBC:RC_W88945_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
HU35KSUBB:RC_H75940_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
U133_X3P:HS.279712.0.A1_3P_AT DnaJ (Hsp40) homolog, subfamily C, member 9 hs
MG-U74AV2:160203_AT DnaJ (Hsp40) homolog, subfamily C, member 9 mm
MOE430A:1426473_AT DnaJ (Hsp40) homolog, subfamily C, member 9 mm
MOUSE430A_2:1426473_AT DnaJ (Hsp40) homolog, subfamily C, member 9 mm
MOUSE430_2:1426473_AT DnaJ (Hsp40) homolog, subfamily C, member 9 mm
MG-U74AV2:96559_AT DnaJ (Hsp40) homolog, subfamily C, member 9 (Dnajc9), mRNA mm
MU11KSUBA:AA261624_AT DnaJ (Hsp40) homolog, subfamily C, member 9 (Dnajc9), mRNA mm
MU19KSUBC:TC41588_AT DnaJ (Hsp40) homolog, subfamily C, member 9 (Dnajc9), mRNA mm
RAE230B:1383181_AT DnaJ (Hsp40) homolog, subfamily C, member 9 (predicted) rn
RAT230_2:1383181_AT DnaJ (Hsp40) homolog, subfamily C, member 9 (predicted) rn
RG-U34B:RC_AI045347_AT DnaJ (Hsp40) homolog, subfamily C, member 9 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA90945 Hypothetical protein T24H10.3 [Caenorhabditis elegans] ref|NP_495944.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-23) [Caenorhabditis elegans] 1.0E-116
blast CAE59803 Hypothetical protein CBG03265 [Caenorhabditis briggsae] 2.0E-90
blast AAH90203 Unknown (protein for MGC:85182) [Xenopus laevis] 9.0E-33
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 4.99999991225835E-15
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 1.4E-28
Sequence
Target Sequence 
>C. ELEGANS:173845_AT
gcaaagcggcagtaattgaatcagaatccgccccttctttcgtcacaacttatctttctt
cctttctctatcttcttacttttccgtatttatgtattccccttccattggtcactgctc
cttgttccatacactccggaattattttttctaacttttgagatctctaatcgtttcttt
tga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAAGCGGCAGTAATTGAATCAGA 98 319 728 Antisense
AGTAATTGAATCAGAATCCGCCCCT 205 61 738 Antisense
CCTTCTTTCGTCACAACTTATCTTT 614 267 760 Antisense
TTCTTTCGTCACAACTTATCTTTCT 137 691 762 Antisense
TTTCGTCACAACTTATCTTTCTTCC 492 671 765 Antisense
TTCTTACTTTTCCGTATTTATGTAT 380 689 800 Antisense
TCCTTGTTCCATACACTCCGGAATT 25 591 846 Antisense
TTGTTCCATACACTCCGGAATTATT 691 701 849 Antisense
CATACACTCCGGAATTATTTTTTCT 182 213 855 Antisense
ATTTTTTCTAACTTTTGAGATCTCT 421 15 871 Antisense
TGAGATCTCTAATCGTTTCTTTTGA 26 569 886 Antisense
Sequence Source Affymetrix Proprietary Database