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[173844_s_at]

Description AV201604 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y22D7AL.M /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV201604 /WB_GENE_ID=Y22D7AL.M /WP=CE26500 /CHR=3 /FEA=Genomic Cluster /DEF=(ST.LOUIS); Caenorhabditis elegans cDNA clone:yk539b10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 82      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 90      6grp_total > 73      4grp_total > 41      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 81.7
(-3)
P 		109.2
(0.1)
P 		134.4
(3)
P 		129.3
(2.4)
P 		53
B 94.4
(-0.3)
P 		124.8
(3)
P 		109.1
(1.3)
P 		70.1
(-3)
P 		55
C 117.1
(-1.7)
P 		130.1
(1)
P 		111
(-3)
P 		139.8
(3)
P 		29
avr 97.7
(-3) 		121.4
(3) 		118.2
(2.2) 		113.1
(0.9) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 130
(-0)
P 		103
(-3)
P 		140.5
(1.1)
P 		157.6
(3)
P 		141.6
(1.2)
P 		129.7
(-0.1)
P 		55
B 129.7
(0.5)
P 		99.7
(-3)
P 		122.8
(-0.3)
P 		151.6
(3)
P 		137.7
(1.4)
P 		112.8
(-1.5)
P 		52
C 135.6
(0.1)
P 		94.2
(-3)
P 		160.6
(1.9)
P 		164.6
(2.2)
P 		174.9
(3)
P 		134.5
(-0)
P 		81
avr 131.8
(0.3) 		99
(-3) 		141.3
(1.3) 		157.9
(3) 		151.4
(2.3) 		125.7
(-0.3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 29.7
(1)
P 		23.7
(-1.2)
P 		35.1
(3)
P 		18.9
(-3)
P 		16
B 30.1
(2.7)
P 		30.8
(3)
P 		25.3
(0.9)
P 		14.9
(-3)
P 		16
C 38.8
(3)
P 		37.4
(2.4)
P 		38.7
(3)
P 		23.6
(-3)
P 		15
avr 32.9
(3) 		30.6
(2) 		33
(3) 		19.1
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 24
(-3)
P 		36.6
(1)
P 		30.6
(-0.9)
P 		40
(2.1)
P 		42.7
(3)
P 		31.6
(-0.6)
P 		19
B 45.1
(0.5)
P 		33.2
(-2.2)
P 		29.8
(-3)
P 		40.2
(-0.6)
P 		55.9
(3)
P 		42
(-0.2)
P 		26
C 50.3
(1.6)
P 		28.7
(-3)
P 		40.9
(-0.4)
P 		33.1
(-2.1)
P 		56.6
(3)
P 		45
(0.5)
P 		28
avr 39.8
(-0.8) 		32.8
(-3) 		33.8
(-2.7) 		37.8
(-1.4) 		51.7
(3) 		39.5
(-0.9) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173844_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24418
Sequence Type Exemplar sequence
Representative Public ID AV201604 NCBI
Target Description AV201604 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y22D7AL.M /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV201604 /WB_GENE_ID=Y22D7AL.M /WP=CE26500 /CHR=3 /FEA=Genomic Cluster /DEF=(ST.LOUIS); Caenorhabditis elegans cDNA clone:yk539b10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065026(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065026 NCBI Caenorhabditis elegans Y22D7AL.9 (Y22D7AL.9) mRNA, complete cds. 9/11 None
GENEFINDER00000002277 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1600808:1616822:-1 11/11 None
Y22D7AL.9 ENSEMBL cdna:known chromosome:CEL140:III:1606834:1614022:-1 gene:Y22D7AL.9 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002264 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1606983-1610916(-) 78.82 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.9
Entrez Gene 175314 Entrez gene
SwissProt Q965Q2 EMBL-EBI
WormBase CE37423 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84598 Hypothetical protein Y22D7AL.9 [Caenorhabditis elegans] ref|NP_497427.2| Y22D7AL.9 [Caenorhabditis elegans] 0.0
blast CAE66433 Hypothetical protein CBG11703 [Caenorhabditis briggsae] 0.0
blast XP_397392 PREDICTED: similar to ENSANGP00000002840 [Apis mellifera] 6.0E-20
blast XP_397392 PREDICTED: similar to ENSANGP00000002840 [Apis mellifera] 9.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 0.059
Pfam IPR001440 EMBL-EBI TPR repeat 0.21
Sequence
Target Sequence 
>C. ELEGANS:173844_S_AT
tcaaacattttggggtacggtagcttcgaaagtacgcaaacaccgcagtgtttacgacaa
aatgcagaatttttcaagtttttgtaaaaaccgcgtgcctaggggtaaaattggaaacaa
caccgaaatcgcgttgtctgcagtggaaaaatcgataaatctagcggaagactgcgagaa
taacgagaaattggcaatttcctgccggttaatcgctgagatttatcaaaaaatcggcgg
tttcaatgacatttccatacaattcgtgcgccgtcatatcgatttattcgaatatgaaaa
ggactcggaaaagaaatgggcgtctctaagggatttattgatttttgaggttgatttgat
tggaaaattcgaaatctacgcgaaaaatgagccgggaacggaaaaaatcgataaaatcga
gaatttattgagaatcatcactgttcaagttaaattacaggaacctcaacttctagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAACATTTTGGGGTACGGTAGCT 580 625 1390 Antisense
ACACCGCAGTGTTTACGACAAAATG 110 109 1429 Antisense
ACCGAAATCGCGTTGTCTGCAGTGG 382 89 1511 Antisense
GAAATTGGCAATTTCCTGCCGGTTA 544 363 1576 Antisense
TTTCCTGCCGGTTAATCGCTGAGAT 261 667 1587 Antisense
ATCGGCGGTTTCAATGACATTTCCA 78 35 1622 Antisense
GACATTTCCATACAATTCGTGCGCC 135 371 1637 Antisense
ATTCGTGCGCCGTCATATCGATTTA 535 7 1651 Antisense
AATGGGCGTCTCTAAGGGATTTATT 469 161 1704 Antisense
GAGAATCATCACTGTTCAAGTTAAA 376 389 1819 Antisense
TTACAGGAACCTCAACTTCTAGAAA 514 679 1844 Antisense
Sequence Source Affymetrix Proprietary Database