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[173841_s_at] EF-hand calcium binding protein

Description CEC7001 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK856.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C08700 /WB_GENE_ID=ZK856.8 /WP=CE06665 /CHR=5 /FEA=Genomic Cluster /DEF=EF-hand calcium binding protein; C.elegans cDNA clone yk137f3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 95      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 68      6grp_total > 86      4grp_total > 09      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2082
1 2 3 4 range
A 1561.4
(-2.8)
P 		1793.1
(-2.1)
P 		1509.4
(-3)
P 		3406
(3)
P 		1897
B 1344.8
(-3)
P 		1549.5
(-2.3)
P 		1607.4
(-2.1)
P 		3093.9
(3)
P 		1749
C 1349
(-3)
P 		1691.5
(-2)
P 		1687.9
(-2)
P 		3427.1
(3)
P 		2078
avr 1418.4
(-3) 		1678
(-2.2) 		1601.6
(-2.4) 		3309
(3) 		1891

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1339
1 2 3 4 5 6 range
A 1395.1
(-3)
P 		1393.9
(-3)
P 		2147.4
(2.8)
P 		2172.6
(3)
P 		2006.6
(1.7)
P 		2176.8
(3)
P 		783
B 1729.1
(-2.9)
P 		1711.8
(-3)
P 		1977.4
(-1.3)
P 		2109.4
(-0.4)
P 		2335.8
(1.1)
P 		2632.3
(3)
P 		921
C 1407
(-3)
P 		1726.4
(-1.6)
P 		1723.9
(-1.6)
P 		1833.7
(-1.1)
P 		1800.4
(-1.2)
P 		2732.7
(3)
P 		1326
avr 1510.4
(-3) 		1610.7
(-2.4) 		1949.6
(-0.4) 		2038.6
(0.2) 		2047.6
(0.2) 		2513.9
(3) 		1004
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 568.5
(3)
P 		389.2
(-3)
P 		394.6
(-2.8)
P 		498.6
(0.7)
P 		179
B 428.9
(-1.8)
P 		382.7
(-2.8)
P 		372.5
(-3)
P 		659.3
(3)
P 		287
C 446.5
(-3)
P 		486.3
(-1.3)
P 		588.3
(3)
P 		577.9
(2.6)
P 		142
avr 481.3
(-0.7) 		419.4
(-3) 		451.8
(-1.8) 		578.6
(3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 724
1 2 3 4 5 6 range
A 257.2
(-3)
P 		495.7
(1.1)
P 		467.7
(0.6)
P 		551
(2.1)
P 		605.5
(3)
P 		530
(1.7)
P 		348
B 601.6
(-1.5)
P 		569.8
(-1.9)
P 		480.2
(-3)
P 		558.7
(-2.1)
P 		949
(2.6)
P 		981.6
(3)
P 		501
C 521.5
(-1.3)
P 		526.8
(-1.3)
P 		438.8
(-2.2)
P 		368.8
(-3)
P 		582.6
(-0.7)
P 		914.8
(3)
P 		546
avr 460.1
(-3) 		530.8
(-1.8) 		462.2
(-3) 		492.8
(-2.4) 		712.4
(1.3) 		808.8
(3) 		349
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173841_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25117
Sequence Type Exemplar sequence
Representative Public ID CEC7001 NCBI
Target Description CEC7001 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK856.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C08700 /WB_GENE_ID=ZK856.8 /WP=CE06665 /CHR=5 /FEA=Genomic Cluster /DEF=EF-hand calcium binding protein; C.elegans cDNA clone yk137f3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073222(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073222 NCBI Caenorhabditis elegans ZK856.8 (ZK856.8) mRNA, complete cds. 11/11 None
SNAP00000036950 ENSEMBL cdna:SNAP chromosome:CEL140:V:10205297:10206035:-1 11/11 None
GENEFINDER00000036973 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10205297:10206056:-1 11/11 None
ZK856.8.2 ENSEMBL cdna:known chromosome:CEL140:V:10205126:10206067:-1 gene:ZK856.8 11/11 None
ZK856.8.1 ENSEMBL cdna:known chromosome:CEL140:V:10205126:10206065:-1 gene:ZK856.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10205192-10206057(-) 100.0 100.0
Public Domain and Genome References
Gene Title EF-hand calcium binding protein
Ensembl ZK856.8
Entrez Gene 179415 Entrez gene
SwissProt Q23643 EMBL-EBI
WormBase CE06665 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257731_AT calcium-binding EF hand family protein at
CANINE:1586809_AT similar to calcium binding protein P22 cfa
CANINE:1586170_AT similar to calcium binding protein P22 cfa
CANINE_2:CFA.2491.1.S1_AT similar to calcium binding protein P22 cfa
CANINE_2:CFAAFFX.14992.1.S1_S_AT similar to calcium binding protein P22 cfa
DROSOPHILA_2:1632462_AT dm
DROSGENOME1:153946_AT dm
CHICKEN:GGA.16756.1.S1_S_AT similar to calcium binding protein P22; calcineurin homologous protein; EF-hand Ca2+-binding protein p22 gga
CHICKEN:GGAAFFX.11643.1.S1_AT similar to calcium binding protein P22; calcineurin homologous protein; EF-hand Ca2+-binding protein p22 gga
CHICKEN:GGA.16756.1.S1_AT Similar to calcium binding protein P22; calcineurin homologous protein; EF-hand Ca2+-binding protein p22 gga
HG-U95AV2:35018_AT calcium binding protein P22 hs
HG-U133_PLUS_2:207993_S_AT calcium binding protein P22 hs
HG-U133A:207993_S_AT calcium binding protein P22 hs
HG-U133A_2:207993_S_AT calcium binding protein P22 hs
HU35KSUBA:HUM_ALU_AT calcium binding protein P22 hs
HU35KSUBB:HUM_ALU_AT calcium binding protein P22 hs
HU35KSUBC:HUM_ALU_AT calcium binding protein P22 hs
HU35KSUBD:HUM_ALU_AT calcium binding protein P22 hs
HUGENEFL:HUM_ALU_AT calcium binding protein P22 hs
HC-G110:HUM_ALU_AT calcium binding protein P22 hs
HU35KSUBB:RC_N94367_AT calcium binding protein P22 hs
HUGENEFL:U61538_AT calcium binding protein P22 hs
U133_X3P:G6005730_3P_A_AT calcium binding protein P22 hs
U133_X3P:HS.85301.3.S1_3P_S_AT calcium binding protein P22 hs
HG-U133A_2:214665_S_AT calcium binding protein P22 hs
HG-FOCUS:214665_S_AT calcium binding protein P22 hs
HG-U133_PLUS_2:214665_S_AT calcium binding protein P22 hs
HG-U133A:214665_S_AT calcium binding protein P22 hs
HG-U95B:49347_AT calcium binding protein P22 hs
HG-U95C:59607_F_AT calcium binding protein P22 hs
HG-U95C:63705_F_AT calcium binding protein P22 hs
HG-U95C:63729_F_AT calcium binding protein P22 hs
HG-U95C:63906_F_AT calcium binding protein P22 hs
HG-U95E:80180_AT calcium binding protein P22 hs
HG-U95E:84419_AT calcium binding protein P22 hs
HG-U133_PLUS_2:211369_AT Calcium binding protein P22 hs
HG-U133A:211369_AT Calcium binding protein P22 hs
HG-U133A_2:211369_AT Calcium binding protein P22 hs
U133_X3P:G7959876_3P_X_AT Calcium binding protein P22 hs
U133_X3P:211369_3P_AT Calcium binding protein P22 hs
MOE430A:1420809_A_AT RIKEN cDNA 1500003O03 gene mm
MOUSE430A_2:1420809_A_AT RIKEN cDNA 1500003O03 gene mm
MOUSE430_2:1420809_A_AT RIKEN cDNA 1500003O03 gene mm
MG-U74AV2:162119_R_AT RIKEN cDNA 1500003O03 gene mm
MOUSE430_2:1450007_AT RIKEN cDNA 1500003O03 gene mm
MOE430A:1450007_AT RIKEN cDNA 1500003O03 gene mm
MOUSE430A_2:1450007_AT RIKEN cDNA 1500003O03 gene mm
MU11KSUBA:AA711076_AT RIKEN cDNA 1500003O03 gene mm
MU11KSUBB:MSA.8207.0_S_AT RIKEN cDNA 1500003O03 gene mm
MU11KSUBB:MSA.10373.0_S_AT RIKEN cDNA 1500003O03 gene mm
MU11KSUBB:MSA.20488.0_S_AT RIKEN cDNA 1500003O03 gene mm
MG-U74AV2:96606_AT RIKEN cDNA 1500003O03 gene mm
MG-U74AV2:96607_AT RIKEN cDNA 1500003O03 gene mm
MOE430A:1420810_AT RIKEN cDNA 1500003O03 gene mm
MOUSE430A_2:1420810_AT RIKEN cDNA 1500003O03 gene mm
MOUSE430_2:1420810_AT RIKEN cDNA 1500003O03 gene mm
MOE430B:1442839_AT RIKEN cDNA 1500003O03 gene (1500003O03Rik), mRNA mm
MOUSE430_2:1442839_AT RIKEN cDNA 1500003O03 gene (1500003O03Rik), mRNA mm
MU19KSUBC:TC39393_AT RIKEN cDNA 1500003O03 gene (1500003O03Rik), mRNA mm
MU19KSUBC:TC39393_G_AT RIKEN cDNA 1500003O03 gene (1500003O03Rik), mRNA mm
MU11KSUBA:D18051_RC_AT RIKEN cDNA 1500003O03 gene (1500003O03Rik), mRNA mm
RG-U34A:U39875_AT calcium binding protein p22 rn
RG-U34B:RC_AI012612_AT calcium binding protein p22 rn
RAE230A:1371469_AT calcium binding protein p22 rn
RAT230_2:1371469_AT calcium binding protein p22 rn
RAE230A:1387388_AT calcium binding protein p22 rn
RAT230_2:1387388_AT calcium binding protein p22 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94856 Hypothetical protein ZK856.8 [Caenorhabditis elegans] ref|NP_505623.1| ZK856.8 [Caenorhabditis elegans] 3.0E-98
blast CAE64754 Hypothetical protein CBG09544 [Caenorhabditis briggsae] 3.0E-97
blast CAA94856 Hypothetical protein ZK856.8 [Caenorhabditis elegans] ref|NP_505623.1| ZK856.8 [Caenorhabditis elegans] 2.0E-94
blast CAE64754 Hypothetical protein CBG09544 [Caenorhabditis briggsae] 2.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.3E-6
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.9E-8
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.3E-6
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.9E-8
Sequence
Target Sequence 
>C. ELEGANS:173841_S_AT
tcaaattgtccgactctacagccgatttttatcacttgataaaaaaggacagggatttct
ttcacgagacgattttttgaatgttcccgagttggctgtgaatcctcttggtgatcgaat
cgtagatgcctttttcacattagcttcttcaaacggtgacaacgaagagcaacagttgaa
ctttcgtcaatttgttcgaattcttgcacactttcaaccgatttcaagagtaaagaaaaa
tgctctcaactcgagaaaagacaaattgcttgttgcgttcaaaatgtacgatttaaataa
aaacgactacatcacacgtgaagaattcaaagtcattctgaacagtatggttggtgccaa
tataacttctgatcaactcgacaagattgctgatcgaacgattgaggaagctgatgcaga
tcgtgatggaaaaatttcttttgatgagttttgtcgagcaatggaaaaaactgatattga
ggagaagatgtcgattcgattcctaaactaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAATTGTCCGACTCTACAGCCGA 207 629 91 Antisense
TCTACAGCCGATTTTTATCACTTGA 52 613 105 Antisense
GACAGGGATTTCTTTCACGAGACGA 284 335 138 Antisense
TTGAATGTTCCCGAGTTGGCTGTGA 330 703 167 Antisense
TGGCTGTGAATCCTCTTGGTGATCG 311 543 183 Antisense
GTGATCGAATCGTAGATGCCTTTTT 305 483 201 Antisense
GATGCCTTTTTCACATTAGCTTCTT 223 413 215 Antisense
TAGCTTCTTCAAACGGTGACAACGA 498 649 231 Antisense
GAATTCTTGCACACTTTCAACCGAT 48 325 288 Antisense
TGGTGCCAATATAACTTCTGATCAA 111 553 442 Antisense
GATGTCGATTCGATTCCTAAACTAA 130 409 577 Antisense
Sequence Source Affymetrix Proprietary Database