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[173839_at] zinc-finger DNA-binding protein

Description C65082 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K02G10.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C65082 /WB_GENE_ID=K02G10.5 /WP=CE04705 /CHR=X /FEA=Genomic Cluster /DEF=zinc-finger DNA-binding protein; C.elegans cDNA clone yk398h1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_high_8_8 > 62      6grp_highest_nonorm > 62      6grp_total > 81      4grp_total > 58      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 548
1 2 3 4 range
A 332.5
(-1)
P 		669.7
(3)
P 		579.9
(1.9)
P 		165.2
(-3)
A 		505
B 297
(-0.8)
P 		440.7
(1.5)
P 		538.6
(3)
P 		157.5
(-3)
P 		381
C 402.5
(-0.1)
P 		400
(-0.1)
P 		682
(3)
P 		133.7
(-3)
M 		548
avr 344
(-0.4) 		503.5
(1.7) 		600.2
(3) 		152.1
(-3) 		448

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 570
1 2 3 4 5 6 range
A 405.9
(0.3)
P 		393
(0.2)
P 		494.8
(1.6)
P 		598.3
(3)
P 		571.6
(2.6)
P 		163.4
(-3)
P 		435
B 238.3
(-3)
P 		567.6
(1)
P 		446.3
(-0.5)
P 		733.3
(3)
P 		476.7
(-0.1)
P 		286.1
(-2.4)
P 		495
C 317.1
(-2.5)
P 		564.4
(1.2)
P 		287.1
(-3)
P 		683.2
(3)
P 		363.5
(-1.8)
P 		316.2
(-2.6)
P 		396
avr 320.4
(-2.1) 		508.3
(0.6) 		409.4
(-0.8) 		671.6
(3) 		470.6
(0.1) 		255.2
(-3) 		416
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 121.1
(1.6)
P 		145.4
(2.7)
P 		151.6
(3)
P 		24.2
(-3)
A 		127
B 94.7
(1)
P 		108.8
(1.9)
P 		124.8
(3)
P 		33.6
(-3)
P 		91
C 133.2
(0.1)
P 		115
(-0.4)
P 		237.7
(3)
P 		22.5
(-3)
M 		215
avr 116.3
(0.7) 		123.1
(1) 		171.4
(3) 		26.8
(-3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 74.8
(-1.4)
P 		139.8
(1.5)
P 		107.8
(0.1)
P 		151.7
(2.1)
P 		172.5
(3)
P 		39.8
(-3)
P 		133
B 82.9
(-3)
P 		188.9
(2.7)
P 		108.4
(-1.6)
P 		194.2
(3)
P 		193.7
(3)
P 		106.7
(-1.7)
P 		111
C 117.5
(-0.3)
P 		172.2
(3)
P 		73.1
(-3)
P 		137.4
(0.9)
P 		117.6
(-0.3)
P 		105.9
(-1)
P 		99
avr 91.7
(-2.4) 		167
(3) 		96.4
(-2.1) 		161.1
(2.6) 		161.3
(2.6) 		84.1
(-3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173839_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25748
Sequence Type Exemplar sequence
Representative Public ID C65082 NCBI
Target Description C65082 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K02G10.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C65082 /WB_GENE_ID=K02G10.5 /WP=CE04705 /CHR=X /FEA=Genomic Cluster /DEF=zinc-finger DNA-binding protein; C.elegans cDNA clone yk398h1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076401(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076401 NCBI Caenorhabditis elegans K02G10.5 (K02G10.5) mRNA, complete cds. 11/11 None
K02G10.5 ENSEMBL cdna:known chromosome:CEL140:X:4687758:4691286:-1 gene:K02G10.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4687812-4691288(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc-finger DNA-binding protein
Ensembl K02G10.5
Entrez Gene 180742 Entrez gene
SwissProt Q21157 EMBL-EBI
WormBase CE04705 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39251 Hypothetical protein K02G10.5 [Caenorhabditis elegans] ref|NP_508802.1| K02G10.5 [Caenorhabditis elegans] 0.0
blast CAE68633 Hypothetical protein CBG14523 [Caenorhabditis briggsae] 0.0
blast CAA21751 Hypothetical protein Y70G10A.3 [Caenorhabditis elegans] ref|NP_499267.1| Y70G10A.3 [Caenorhabditis elegans] 7.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508802.1 12 44-66,89-111,118-140,179-201,214-236,262-284,329-351,366-386,399-421,511-533,554-573,599-621
K02G10.5 12 44-66,89-111,118-140,179-201,214-236,262-284,329-351,366-386,399-421,511-533,554-573,599-621
Sequence
Target Sequence 
>C. ELEGANS:173839_AT
gttgcgtttagaatttgccgagcggattgtcgcccgaaacaatggtgtactagttcgtca
tcttcagtttttcgacgtgtttattttttctgttaacgggatataatcgtccactttcaa
agtcaactttacaaatccgggtgttctcctatctgtgtttgatttctatttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCGTTTAGAATTTGCCGAGCGG 512 439 2012 Antisense
GAATTTGCCGAGCGGATTGTCGCCC 55 325 2022 Antisense
TGTCGCCCGAAACAATGGTGTACTA 196 475 2039 Antisense
TGGTGTACTAGTTCGTCATCTTCAG 503 553 2054 Antisense
AGTTCGTCATCTTCAGTTTTTCGAC 142 65 2063 Antisense
CATCTTCAGTTTTTCGACGTGTTTA 327 213 2070 Antisense
AACGGGATATAATCGTCCACTTTCA 531 141 2106 Antisense
AATCGTCCACTTTCAAAGTCAACTT 79 169 2116 Antisense
TTTACAAATCCGGGTGTTCTCCTAT 28 667 2139 Antisense
GTGTTCTCCTATCTGTGTTTGATTT 585 485 2152 Antisense
CTATCTGTGTTTGATTTCTATTTCT 302 225 2160 Antisense
Sequence Source Affymetrix Proprietary Database