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[173838_at] P58 protein like

Description AV194445 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K07A1.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV194445 /WB_GENE_ID=K07A1.8 /WP=CE11854 /CHR=1 /FEA=Genomic Cluster /DEF=P58 protein like; Caenorhabditis elegans cDNA clone:yk629e4 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 49      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 57      6grp_total > 59      4grp_total > 48      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2245
1 2 3 4 range
A 1749.5
(-3)
P 		2690.9
(0.4)
P 		3433.3
(3)
P 		2041.1
(-2)
P 		1684
B 1536.2
(-3)
P 		3298.4
(1.7)
P 		3781.5
(3)
P 		2278.5
(-1)
P 		2245
C 1821.8
(-3)
P 		3428.1
(3)
P 		3432.7
(3)
P 		1865.7
(-2.8)
P 		1611
avr 1702.5
(-3) 		3139.1
(1.7) 		3549.2
(3) 		2061.8
(-1.8) 		1847

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 966
1 2 3 4 5 6 range
A 2186.9
(-1)
P 		2127.6
(-1.8)
P 		2194.1
(-0.9)
P 		2031.5
(-3)
P 		2499.9
(3)
P 		2373.2
(1.4)
P 		468
B 2654.3
(3)
P 		2082.9
(-2.7)
P 		2052.5
(-3)
P 		2657.1
(3)
P 		2276.3
(-0.8)
P 		2399
(0.4)
P 		605
C 2425.2
(2.2)
P 		1690.9
(-3)
P 		2080.8
(-0.2)
P 		2273.8
(1.2)
P 		2345.8
(1.7)
P 		2532.2
(3)
P 		841
avr 2422.1
(2.8) 		1967.1
(-3) 		2109.1
(-1.2) 		2320.8
(1.5) 		2374
(2.2) 		2434.8
(3) 		468
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 898
1 2 3 4 range
A 637
(0.4)
P 		584.1
(-0.1)
P 		897.5
(3)
P 		298.8
(-3)
P 		599
B 489.9
(-2.9)
P 		814.6
(2.1)
P 		876.3
(3)
P 		485.5
(-3)
P 		391
C 603.1
(-1)
P 		985.6
(1.6)
P 		1196.4
(3)
P 		314.6
(-3)
P 		882
avr 576.7
(-1) 		794.8
(1.1) 		990.1
(3) 		366.3
(-3) 		624

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 522
1 2 3 4 5 6 range
A 403.1
(-3)
P 		756.7
(3)
P 		477.8
(-1.7)
P 		515.2
(-1.1)
P 		754.4
(3)
P 		577.8
(-0)
P 		354
B 923.6
(3)
P 		693.3
(-0.3)
P 		498.4
(-3)
P 		703.8
(-0.1)
P 		924.8
(3)
P 		894.6
(2.6)
P 		426
C 898.9
(3)
P 		515.9
(-2.2)
P 		529.6
(-2)
P 		457.3
(-3)
P 		759.1
(1.1)
P 		847.7
(2.3)
P 		442
avr 741.9
(1.6) 		655.3
(-0) 		501.9
(-3) 		558.8
(-1.9) 		812.8
(3) 		773.4
(2.2) 		311
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173838_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22672
Sequence Type Exemplar sequence
Representative Public ID AV194445 NCBI
Target Description AV194445 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K07A1.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV194445 /WB_GENE_ID=K07A1.8 /WP=CE11854 /CHR=1 /FEA=Genomic Cluster /DEF=P58 protein like; Caenorhabditis elegans cDNA clone:yk629e4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060147(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060147 NCBI Caenorhabditis elegans Intracellular LEctin family member (ile-1) (ile-1) mRNA, complete cds. 11/11 None
K07A1.8.3 ENSEMBL cdna:known chromosome:CEL140:I:9617636:9619658:-1 gene:K07A1.8 11/11 None
K07A1.8.1 ENSEMBL cdna:known chromosome:CEL140:I:9617636:9619707:-1 gene:K07A1.8 11/11 A 
K07A1.8.2 ENSEMBL cdna:known chromosome:CEL140:I:9617636:9619656:-1 gene:K07A1.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9617625-9619586(-) 100.0 100.0
Public Domain and Genome References
Gene Title P58 protein like
Gene Symbol ile-1
Ensembl K07A1.8
Entrez Gene 172799 Entrez gene
SwissProt P90913 EMBL-EBI
WormBase CE11854 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587465_AT similar to ERGIC-53 protein precursor (ER-Golgi intermediate compartment 53 kDa protein) (Lectin, mannose-binding 1) (Gp58) (Intracellular mannose specific lectin MR60) cfa
CANINE_2:CFAAFFX.1112.1.S1_S_AT similar to ERGIC-53 protein precursor (ER-Golgi intermediate compartment 53 kDa protein) (Lectin, mannose-binding 1) (Gp58) (Intracellular mannose specific lectin MR60) cfa
DROSOPHILA_2:1640635_A_AT dm
DROSOPHILA_2:1624560_AT dm
DROSGENOME1:155025_AT dm
CHICKEN:GGA.1035.2.S1_A_AT lectin, mannose-binding, 1 gga
CHICKEN:GGA.2274.1.S1_A_AT Similar to ERGIC-53 protein precursor (ER-Golgi intermediate compartment 53 kDa protein) (Lectin, mannose-binding 1) (Gp58) (Intracellular mannose specific lectin MR60) gga
HG-U133A:203293_S_AT lectin, mannose-binding, 1 hs
HG-U133_PLUS_2:203293_S_AT lectin, mannose-binding, 1 hs
HG-FOCUS:203293_S_AT lectin, mannose-binding, 1 hs
HG-U133A_2:203293_S_AT lectin, mannose-binding, 1 hs
HG-U133A:203294_S_AT lectin, mannose-binding, 1 hs
HG-U133A_2:203294_S_AT lectin, mannose-binding, 1 hs
HG-U133_PLUS_2:203294_S_AT lectin, mannose-binding, 1 hs
HU35KSUBD:RC_AA600257_S_AT lectin, mannose-binding, 1 hs
HUGENEFL:X71661_AT lectin, mannose-binding, 1 hs
HUGENEFL:U09716_S_AT lectin, mannose-binding, 1 hs
U133_X3P:G606827_3P_A_AT lectin, mannose-binding, 1 hs
U133_X3P:G10862689_3P_S_AT lectin, mannose-binding, 1 hs
HU35KSUBA:RC_AA452855_AT Lectin, mannose-binding, 1 hs
HU35KSUBA:AA404252_AT Lectin, mannose-binding, 1 hs
HU35KSUBC:RC_AA243495_AT Lectin, mannose-binding, 1 hs
HU35KSUBD:RC_AA459256_AT Lectin, mannose-binding, 1 hs
U133_X3P:HS.5822.0.S1_3P_AT Lectin, mannose-binding, 1 hs
HG-U133_PLUS_2:224629_AT Lectin, mannose-binding, 1 hs
HG-U133B:224629_AT Lectin, mannose-binding, 1 hs
HG-U95AV2:34734_AT Lectin, mannose-binding, 1 hs
HG-U95C:64263_S_AT Lectin, mannose-binding, 1 hs
HG-U95C:65907_R_AT Lectin, mannose-binding, 1 hs
MU11KSUBB:W40847_AT lectin, mannose-binding, 1 mm
MU11KSUBB:W40847_G_AT lectin, mannose-binding, 1 mm
MG-U74BV2:112766_AT lectin, mannose-binding, 1 mm
MG-U74AV2:161288_R_AT lectin, mannose-binding, 1 mm
MG-U74AV2:160270_AT lectin, mannose-binding, 1 mm
MOE430A:1428129_AT lectin, mannose-binding, 1 mm
MOUSE430A_2:1428129_AT lectin, mannose-binding, 1 mm
MOUSE430_2:1428129_AT lectin, mannose-binding, 1 mm
MOE430A:1428130_AT lectin, mannose-binding, 1 mm
MOUSE430A_2:1428130_AT lectin, mannose-binding, 1 mm
MOUSE430_2:1428130_AT lectin, mannose-binding, 1 mm
MOE430A:1452671_S_AT lectin, mannose-binding, 1 mm
MOUSE430A_2:1452671_S_AT lectin, mannose-binding, 1 mm
MOUSE430_2:1452671_S_AT lectin, mannose-binding, 1 mm
MOE430A:1419951_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MOUSE430A_2:1419951_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MOUSE430_2:1419951_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MOE430B:1444037_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MOUSE430_2:1444037_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MG-U74CV2:168563_R_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MU19KSUBA:TC19935_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MU19KSUBA:TC19935_G_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MU19KSUBA:TC23910_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MU19KSUBA:TC23910_G_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MU19KSUBC:TC38028_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
MU11KSUBA:D18928_RC_AT Lectin, mannose-binding, 1 (Lman1), mRNA mm
RG-U34A:U44129_AT lectin, mannose-binding, 1 rn
RAE230A:1368848_AT lectin, mannose-binding, 1 rn
RAT230_2:1368848_AT lectin, mannose-binding, 1 rn
RAE230B:1385238_AT Lectin, mannose-binding, 1 rn
RAT230_2:1385238_AT Lectin, mannose-binding, 1 rn
RG-U34A:RC_AA997526_AT Lectin, mannose-binding, 1 rn
RG-U34A:RC_AI137470_AT Lectin, mannose-binding, 1 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03169 Hypothetical protein K07A1.8 [Caenorhabditis elegans] ref|NP_492548.1| Intracellular LEctin family member (ile-1) [Caenorhabditis elegans] 0.0
blast CAE60162 Hypothetical protein CBG03714 [Caenorhabditis briggsae] 0.0
blast XP_780803 PREDICTED: similar to CG6822-PA, isoform A [Strongylocentrotus purpuratus] 1.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR005052 EMBL-EBI Legume-like lectin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492548.1 1 460-482
K07A1.8.3 1 460-482
K07A1.8.1 1 460-482
K07A1.8.2 1 460-482
Sequence
Target Sequence 
>C. ELEGANS:173838_AT
aatttattgcattctaaccatcattaactaacaatgtctttccccttcgaacctgtcgtc
aaatgtgatgttttgttctcaatacagcgtatttacgacattatcgcgaccccacaacga
attttcttattcaaaaaatcccctggtaaataatatcatctcacccctgattgtgttgtg
ttttagtcagatttcccccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTATTGCATTCTAACCATCATT 449 175 1491 Antisense
GCATTCTAACCATCATTAACTAACA 546 305 1499 Antisense
CATTAACTAACAATGTCTTTCCCCT 622 213 1512 Antisense
CCCCTTCGAACCTGTCGTCAAATGT 177 1 1532 Antisense
GAACCTGTCGTCAAATGTGATGTTT 133 347 1539 Antisense
GATGTTTTGTTCTCAATACAGCGTA 51 411 1557 Antisense
TATTTACGACATTATCGCGACCCCA 291 661 1580 Antisense
AAATCCCCTGGTAAATAATATCATC 144 119 1626 Antisense
ATAATATCATCTCACCCCTGATTGT 50 27 1640 Antisense
ATCTCACCCCTGATTGTGTTGTGTT 529 29 1648 Antisense
TTGTGTTTTAGTCAGATTTCCCCCG 562 695 1666 Antisense
Sequence Source Affymetrix Proprietary Database