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[173837_s_at]

Description AU114053_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=D2023.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU114053 /WB_GENE_ID=D2023.1 /WP=CE27750 /CHR=5 /FEA=Genomic Cluster /DEF=cytochrome b5; Caenorhabditis elegans cDNA clone:yk714f6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      6grp_highest_nonorm > 53      6grp_total > 71      4grp_total > 05      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 307
1 2 3 4 range
A 254.3
(-0.9)
P 		150.4
(-3)
A 		203.2
(-1.9)
A 		446.9
(3)
P 		297
B 189.6
(-1.9)
P 		216.4
(-1.3)
A 		141
(-3)
M 		403.1
(3)
P 		262
C 304.4
(2.5)
P 		178.3
(-1.7)
A 		139.5
(-3)
M 		318
(3)
P 		179
avr 249.4
(-0.7) 		181.7
(-2.5) 		161.2
(-3) 		389.3
(3) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1379
1 2 3 4 5 6 range
A 340.7
(-1.8)
P 		508.9
(-0.3)
P 		785
(2.1)
P 		811.1
(2.4)
P 		882.1
(3)
P 		200.8
(-3)
P 		681
B 363.2
(-2.6)
P 		671.6
(0.2)
P 		865.1
(2)
P 		974.7
(3)
P 		734.4
(0.8)
P 		318.1
(-3)
P 		657
C 359
(-2.2)
P 		658.4
(-0.9)
P 		743.4
(-0.5)
P 		1558.6
(3)
P 		595.6
(-1.2)
P 		180
(-3)
P 		1379
avr 354.3
(-2.2) 		613
(-0.4) 		797.8
(0.8) 		1114.8
(3) 		737.4
(0.4) 		233
(-3) 		882
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 92.6
(3)
P 		32.6
(-3)
A 		53.1
(-1)
A 		65.4
(0.3)
P 		60
B 60.5
(0.1)
P 		53.4
(-0.7)
A 		32.7
(-3)
M 		85.9
(3)
P 		53
C 100.8
(3)
P 		51.3
(-2.7)
A 		48.6
(-3)
M 		53.6
(-2.4)
P 		52
avr 84.6
(3) 		45.8
(-2.8) 		44.8
(-3) 		68.3
(0.5) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 62.8
(-2.6)
P 		181
(0.6)
P 		170.9
(0.4)
P 		205.7
(1.3)
P 		266.2
(3)
P 		48.9
(-3)
P 		217
B 126.4
(-2.7)
P 		223.5
(0.5)
P 		210.1
(0.1)
P 		258.2
(1.7)
P 		298.4
(3)
P 		118.6
(-3)
P 		180
C 133.1
(-1.3)
P 		200.9
(0.3)
P 		189.2
(0.1)
P 		313.4
(3)
P 		192.7
(0.1)
P 		60.3
(-3)
P 		253
avr 107.4
(-2) 		201.8
(1.1) 		190.1
(0.7) 		259.1
(3) 		252.4
(2.8) 		75.9
(-3) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173837_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25568
Sequence Type Exemplar sequence
Representative Public ID AU114053 NCBI
Target Description AU114053_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=D2023.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU114053 /WB_GENE_ID=D2023.1 /WP=CE27750 /CHR=5 /FEA=Genomic Cluster /DEF=cytochrome b5; Caenorhabditis elegans cDNA clone:yk714f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000024923 ENSEMBL cdna:SNAP chromosome:CEL140:V:11802470:11802838:1 11/11 None
GENEFINDER00000024937 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11794027:11802838:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11802470-11802839(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE75296 Hypothetical protein CBG23264 [Caenorhabditis briggsae] 1.0E-172
blast T20347 hypothetical protein D2023.1 - Caenorhabditis elegans 1.0E-55
blast T20347 hypothetical protein D2023.1 - Caenorhabditis elegans 8.0E-55
blast CAE75296 Hypothetical protein CBG23264 [Caenorhabditis briggsae] 5.0E-53
blast EAL25975 GA15264-PA [Drosophila pseudoobscura] 9.0E-19
blast EAL25975 GA15264-PA [Drosophila pseudoobscura] 8.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR001199 EMBL-EBI Cytochrome b5 2.8E-20
Pfam IPR001199 EMBL-EBI Cytochrome b5 2.8E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024937 6 7-28,43-65,72-94,104-126,153-175,195-217
Sequence
Target Sequence 
>C. ELEGANS:173837_S_AT
tcacccgctccgaagttaacatgcactgtagcgaagatgactgttggattattgttggaa
actatgtctacgacgtcacaaagttcgtcgatctccacccaggaggcccagaaattcttc
tcgaattcgccggaggtgatgccaccgatgctttcgagtccgtcggacactcaatgtgtg
cccgcatgatgctcacaaagttcaaaattggctctttaccagaggatgagcgtccagatt
ttattcaagccgaatacatcactcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCCGCTCCGAAGTTAACATGCA 646 625 28 Antisense
GGAAACTATGTCTACGACGTCACAA 644 527 84 Antisense
GTCACAAAGTTCGTCGATCTCCACC 278 465 102 Antisense
CCACCCAGGAGGCCCAGAAATTCTT 363 273 122 Antisense
TTCTTCTCGAATTCGCCGGAGGTGA 578 689 142 Antisense
ATTCGCCGGAGGTGATGCCACCGAT 665 7 152 Antisense
ATGCTTTCGAGTCCGTCGGACACTC 337 43 175 Antisense
CCGTCGGACACTCAATGTGTGCCCG 441 263 187 Antisense
TGTGCCCGCATGATGCTCACAAAGT 654 555 204 Antisense
AGGATGAGCGTCCAGATTTTATTCA 282 55 250 Antisense
ATTCAAGCCGAATACATCACTCATG 268 11 270 Antisense
Sequence Source Affymetrix Proprietary Database