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[173830_at] hydrophobic nucleolar protein like

Description C44886 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK809.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C44886 /WB_GENE_ID=ZK809.4 /WP=CE18465 /CHR=4 /FEA=Genomic Cluster /DEF=hydrophobic nucleolar protein like; C.elegans cDNA clone yk373c3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 97      4grp_highest_8_8 > 19      4grp_high_8_8 > 47      6grp_highest_nonorm > 98      6grp_total > 97      4grp_total > 40      6grp_highest_sub > Da      6grp_cgc > 69      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 649
1 2 3 4 range
A 623.8
(-3)
P 		902.7
(0)
P 		1172.5
(3)
P 		658.2
(-2.6)
P 		549
B 683.4
(-3)
P 		842.2
(-1.3)
P 		1248
(3)
P 		945.1
(-0.2)
P 		565
C 598.7
(-3)
P 		894.1
(-0.2)
P 		1224.9
(3)
P 		776.9
(-1.3)
P 		626
avr 635.3
(-3) 		879.7
(-0.5) 		1215.1
(3) 		793.4
(-1.4) 		580

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1606
1 2 3 4 5 6 range
A 754.1
(-2.5)
P 		914.3
(-1.8)
P 		650.8
(-3)
P 		771.9
(-2.4)
P 		1429.4
(0.6)
P 		1940
(3)
P 		1289
B 744.3
(-1.4)
P 		746.4
(-1.4)
P 		333.8
(-3)
P 		1161
(0.3)
P 		1306.3
(0.9)
P 		1840.1
(3)
P 		1506
C 758.3
(-2.1)
P 		607
(-3)
P 		800.1
(-1.8)
P 		893
(-1.2)
P 		1281.4
(1.2)
P 		1565.4
(3)
P 		958
avr 752.2
(-2.2) 		755.9
(-2.2) 		594.9
(-3) 		942
(-1.2) 		1339
(0.8) 		1781.8
(3) 		1187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 227.1
(0.7)
P 		196
(-0.2)
P 		306.5
(3)
P 		96.3
(-3)
P 		210
B 217.9
(-1.9)
P 		208
(-2.5)
P 		289.2
(3)
P 		201.4
(-3)
P 		88
C 198.2
(-1.6)
P 		257.1
(-0.4)
P 		426.9
(3)
P 		131
(-3)
P 		296
avr 214.4
(-0.8) 		220.4
(-0.7) 		340.9
(3) 		142.9
(-3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 605
1 2 3 4 5 6 range
A 139
(-3)
P 		325.2
(0.4)
P 		141.7
(-3)
P 		195.8
(-2)
P 		431.3
(2.3)
P 		472.3
(3)
P 		333
B 259
(-1.2)
P 		248.4
(-1.3)
P 		81.1
(-3)
P 		307.5
(-0.8)
P 		530.7
(1.5)
P 		686.2
(3)
P 		605
C 281.1
(-1.2)
P 		185.2
(-2.9)
P 		203.6
(-2.6)
P 		179.6
(-3)
P 		414.6
(1.1)
P 		524
(3)
P 		344
avr 226.4
(-1.8) 		252.9
(-1.4) 		142.1
(-3) 		227.6
(-1.8) 		458.9
(1.5) 		560.8
(3) 		419
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173830_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24816
Sequence Type Exemplar sequence
Representative Public ID C44886 NCBI
Target Description C44886 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK809.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C44886 /WB_GENE_ID=ZK809.4 /WP=CE18465 /CHR=4 /FEA=Genomic Cluster /DEF=hydrophobic nucleolar protein like; C.elegans cDNA clone yk373c3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069803(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069803 NCBI Caenorhabditis elegans Equilibrative Nucleoside Transporter family member (ent-1) (ent-1) mRNA, complete cds. 11/11 A 
ZK809.4 ENSEMBL cdna:known chromosome:CEL140:IV:11653395:11655440:-1 gene:ZK809.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11653438-11655441(-) 100.0 100.0
Public Domain and Genome References
Gene Title hydrophobic nucleolar protein like
Gene Symbol ent-1
Ensembl ZK809.4
Entrez Gene 178097 Entrez gene
SwissProt Q23599 EMBL-EBI
WormBase CE31754 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1636766_AT Equilibrative nucleoside transporter 2 dm
DROSGENOME1:152416_AT Equilibrative nucleoside transporter 2 dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5337 nucleoside transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92642 Hypothetical protein ZK809.4 [Caenorhabditis elegans] ref|NP_502204.2| Equilibrative Nucleoside Transporter family member (ent-1) [Caenorhabditis elegans] gb|AAM46663.1| equilibrative nucleoside transporter 1 [Caenorhabditis elegans] 0.0
blast CAB01882 Hypothetical protein K09A9.3 [Caenorhabditis elegans] ref|NP_510571.1| Equilibrative Nucleoside Transporter family member (ent-2) [Caenorhabditis elegans] 0.0
blast CAE63332 Hypothetical protein CBG07732 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502204.2 10 29-51,115-137,142-164,177-199,214-233,273-295,315-337,350-367,382-404,417-439
ZK809.4 10 29-51,115-137,142-164,177-199,214-233,273-295,315-337,350-367,382-404,417-439
Sequence
Target Sequence 
>C. ELEGANS:173830_AT
catcaacctcatcattagcaatattaattccctaacgtaaattctttcataaccttcaag
gtttcctctgtagtatctttatccactagtgttctttccttaaaatacctcttaatactt
tgttgttctttgttattttccttcttcaggtatttccgcagcacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCAACCTCATCATTAGCAATATT 408 213 1427 Antisense
TAGCAATATTAATTCCCTAACGTAA 526 651 1442 Antisense
CGTAAATTCTTTCATAACCTTCAAG 550 219 1462 Antisense
TAACCTTCAAGGTTTCCTCTGTAGT 247 637 1476 Antisense
TTTCCTCTGTAGTATCTTTATCCAC 536 669 1488 Antisense
TATCCACTAGTGTTCTTTCCTTAAA 302 657 1506 Antisense
ATACCTCTTAATACTTTGTTGTTCT 120 23 1531 Antisense
TGTTGTTCTTTGTTATTTTCCTTCT 643 561 1547 Antisense
TTCTTTGTTATTTTCCTTCTTCAGG 620 689 1552 Antisense
TCCTTCTTCAGGTATTTCCGCAGCA 699 591 1565 Antisense
TTCTTCAGGTATTTCCGCAGCACCA 148 691 1568 Antisense
Sequence Source Affymetrix Proprietary Database