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[173824_at] sodium/phophate transporter

Description C40422 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK682.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C40422 /WB_GENE_ID=ZK682.2 /WP=CE07636 /CHR=5 /FEA=Genomic Cluster /DEF=sodium-phophate transporter; C.elegans cDNA clone yk230f1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 74      6grp_total > 29      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 984
1 2 3 4 range
A 447.9
(-0.4)
P 		212.4
(-3)
P 		231.2
(-2.8)
P 		751.4
(3)
P 		539
B 548.8
(-0.7)
P 		251.6
(-3)
P 		283
(-2.8)
P 		1042.2
(3)
P 		791
C 608
(-0.8)
P 		257
(-3)
P 		275.8
(-2.9)
P 		1196.4
(3)
P 		939
avr 534.9
(-0.7) 		240.3
(-3) 		263.3
(-2.8) 		996.7
(3) 		756

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 805
1 2 3 4 5 6 range
A 783
(1.1)
P 		835.7
(1.9)
P 		617.2
(-1.5)
P 		638.4
(-1.1)
P 		910.1
(3)
P 		517.2
(-3)
P 		393
B 906.2
(1.8)
P 		692
(0.2)
P 		256.9
(-3)
P 		715.2
(0.4)
P 		1062.2
(3)
P 		788.3
(1)
P 		805
C 870.5
(2.3)
P 		751.4
(1)
P 		557.7
(-1.2)
P 		395.4
(-3)
P 		935.8
(3)
P 		482.3
(-2)
P 		540
avr 853.2
(1.6) 		759.7
(0.4) 		477.3
(-3) 		583
(-1.7) 		969.4
(3) 		595.9
(-1.6) 		492
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 163.1
(3)
P 		46.1
(-3)
P 		60.4
(-2.3)
P 		110
(0.3)
P 		117
B 175
(1.2)
P 		62.1
(-3)
P 		65.6
(-2.9)
P 		222.1
(3)
P 		160
C 201.3
(3)
P 		73.9
(-3)
P 		96.1
(-2)
P 		201.7
(3)
P 		128
avr 179.8
(3) 		60.7
(-3) 		74
(-2.3) 		177.9
(2.9) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 369
1 2 3 4 5 6 range
A 144.3
(-2.4)
P 		297.2
(3)
P 		134.4
(-2.7)
P 		161.9
(-1.7)
P 		274.6
(2.2)
P 		125.9
(-3)
P 		171
B 315.3
(1.1)
P 		230.3
(-0.3)
P 		62.4
(-3)
P 		189.4
(-0.9)
P 		431.6
(3)
P 		293.9
(0.8)
P 		369
C 322.6
(3)
P 		229.3
(0.7)
P 		142
(-1.5)
P 		79.5
(-3)
P 		302.8
(2.5)
P 		161.4
(-1)
P 		243
avr 260.7
(1) 		252.3
(0.7) 		112.9
(-3) 		143.6
(-2.2) 		336.3
(3) 		193.7
(-0.8) 		223
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173824_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25245
Sequence Type Exemplar sequence
Representative Public ID C40422 NCBI
Target Description C40422 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK682.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C40422 /WB_GENE_ID=ZK682.2 /WP=CE07636 /CHR=5 /FEA=Genomic Cluster /DEF=sodium-phophate transporter; C.elegans cDNA clone yk230f1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072998(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072998 NCBI Caenorhabditis elegans ZK682.2 (ZK682.2) mRNA, complete cds. 11/11 None
ZK682.2.1 ENSEMBL cdna:known chromosome:CEL140:V:9266384:9269026:-1 gene:ZK682.2 11/11 None
ZK682.2.2 ENSEMBL cdna:known chromosome:CEL140:V:9266384:9269084:-1 gene:ZK682.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9266413-9268994(-) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/phophate transporter
Ensembl ZK682.2
Entrez Gene 179308 Entrez gene
SwissProt Q23576 EMBL-EBI
WormBase CE07636 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82415 Hypothetical protein ZK682.2 [Caenorhabditis elegans] ref|NP_505399.1| ZK682.2 [Caenorhabditis elegans] 0.0
blast CAE72145 Hypothetical protein CBG19243 [Caenorhabditis briggsae] 0.0
blast AAM15567 Hypothetical protein F12B6.2a [Caenorhabditis elegans] ref|NP_490947.2| F12B6.2a [Caenorhabditis elegans] 1.0E-74
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505399.1 12 13-35,94-116,123-142,152-174,186-205,215-237,278-300,315-334,354-376,380-399,412-434,449-471
ZK682.2.1 12 13-35,94-116,123-142,152-174,186-205,215-237,278-300,315-334,354-376,380-399,412-434,449-471
ZK682.2.2 12 13-35,94-116,123-142,152-174,186-205,215-237,278-300,315-334,354-376,380-399,412-434,449-471
Sequence
Target Sequence 
>C. ELEGANS:173824_AT
acgacgtgtcttcttaacatatcacaaatcctaatcatctcatactggttctacacttgg
tttatcgatctgtcacaatttttcttgtttgctcattctgtgataccttttcctgtattt
ttctgtaaggtggtcaaatatgagattatctctaatttgtcttaatttgggataatgttt
cttgtttttctacgggtccctcacaacattcctttaataga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACGTGTCTTCTTAACATATCAC 226 93 1546 Antisense
TCACAAATCCTAATCATCTCATACT 303 629 1567 Antisense
ATCTCATACTGGTTCTACACTTGGT 35 33 1582 Antisense
TACACTTGGTTTATCGATCTGTCAC 247 643 1597 Antisense
GTCACAATTTTTCTTGTTTGCTCAT 170 465 1617 Antisense
TCATTCTGTGATACCTTTTCCTGTA 544 619 1638 Antisense
CTGTATTTTTCTGTAAGGTGGTCAA 323 237 1658 Antisense
GAGATTATCTCTAATTTGTCTTAAT 574 397 1687 Antisense
TGGGATAATGTTTCTTGTTTTTCTA 306 553 1713 Antisense
TTTTTCTACGGGTCCCTCACAACAT 227 673 1730 Antisense
TCCCTCACAACATTCCTTTAATAGA 648 597 1742 Antisense
Sequence Source Affymetrix Proprietary Database