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[173820_s_at] hydrolase

Description AU111908 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K07C5.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU111908 /WB_GENE_ID=K07C5.5 /WP=CE06115 /CHR=5 /FEA=Genomic Cluster /DEF=hydrolase; Caenorhabditis elegans cDNA clone:yk736d11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 84      6grp_total > 65      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2672
1 2 3 4 range
A 487.9
(-3)
P 		560.5
(-2.8)
P 		660.2
(-2.6)
P 		2835.2
(3)
P 		2347
B 485.3
(-3)
P 		558.5
(-2.8)
P 		632.1
(-2.7)
P 		3068.7
(3)
P 		2583
C 562.9
(-2.9)
P 		512.2
(-3)
P 		703.7
(-2.6)
P 		3157
(3)
P 		2645
avr 512
(-3) 		543.7
(-2.9) 		665.3
(-2.6) 		3020.3
(3) 		2508

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 614
1 2 3 4 5 6 range
A 637
(0.2)
P 		487.6
(-2.3)
P 		787.4
(2.7)
P 		637.8
(0.2)
P 		443.8
(-3)
P 		803.7
(3)
P 		360
B 629.5
(-0.2)
P 		511.6
(-1.7)
P 		780.3
(1.7)
P 		629.2
(-0.2)
P 		412.4
(-3)
P 		883
(3)
P 		471
C 571.6
(-1.5)
P 		541.1
(-1.8)
P 		670.9
(-0.5)
P 		638.3
(-0.8)
P 		420.2
(-3)
P 		1026.6
(3)
P 		606
avr 612.7
(-0.7) 		513.4
(-1.9) 		746.2
(1) 		635.1
(-0.4) 		425.5
(-3) 		904.4
(3) 		479
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 532
1 2 3 4 range
A 177.6
(-1.9)
P 		121.7
(-3)
P 		172.6
(-2)
P 		415
(3)
P 		293
B 154.8
(-2.8)
P 		137.9
(-3)
P 		146.5
(-2.9)
P 		653.9
(3)
P 		516
C 186.3
(-2.4)
P 		147.3
(-3)
P 		245.3
(-1.5)
P 		532.3
(3)
P 		385
avr 172.9
(-2.4) 		135.6
(-3) 		188.1
(-2.2) 		533.7
(3) 		398

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 117.4
(-3)
P 		173.4
(1.3)
P 		171.5
(1.1)
P 		161.8
(0.4)
P 		133.9
(-1.7)
P 		195.7
(3)
P 		78
B 219
(-1.1)
P 		170.3
(-2.9)
P 		189.5
(-2.2)
P 		166.6
(-3)
P 		167.5
(-3)
P 		329.3
(3)
P 		163
C 211.9
(-0.7)
P 		165.1
(-2)
P 		170.8
(-1.8)
P 		128.4
(-3)
P 		136
(-2.8)
P 		343.7
(3)
P 		215
avr 182.8
(-1.5) 		169.6
(-2) 		177.3
(-1.7) 		152.3
(-2.7) 		145.8
(-3) 		289.6
(3) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173820_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25234
Sequence Type Exemplar sequence
Representative Public ID AU111908 NCBI
Target Description AU111908 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K07C5.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU111908 /WB_GENE_ID=K07C5.5 /WP=CE06115 /CHR=5 /FEA=Genomic Cluster /DEF=hydrolase; Caenorhabditis elegans cDNA clone:yk736d11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073261(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073261 NCBI Caenorhabditis elegans K07C5.5 (hydrolase) mRNA, complete cds. 11/11 None
SNAP00000014066 ENSEMBL cdna:SNAP chromosome:CEL140:V:10358931:10360220:-1 11/11 None
GENEFINDER00000014071 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10358931:10360025:-1 11/11 None
K07C5.5 ENSEMBL cdna:known chromosome:CEL140:V:10358878:10360240:-1 gene:K07C5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10358931-10360221(-) 100.0 100.0
Public Domain and Genome References
Gene Title hydrolase
Ensembl K07C5.5
Entrez Gene 179444 Entrez gene
SwissProt Q21277 EMBL-EBI
WormBase CE06115 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94898 Hypothetical protein K07C5.5 [Caenorhabditis elegans] ref|NP_505662.1| K07C5.5 [Caenorhabditis elegans] 0.0
blast CAE64799 Hypothetical protein CBG09592 [Caenorhabditis briggsae] 0.0
blast CAA94898 Hypothetical protein K07C5.5 [Caenorhabditis elegans] ref|NP_505662.1| K07C5.5 [Caenorhabditis elegans] 1.0E-173
blast CAE64799 Hypothetical protein CBG09592 [Caenorhabditis briggsae] 1.0E-149
blast AAK95881 Hypothetical protein K02F3.6 [Caenorhabditis elegans] ref|NP_497268.1| K02F3.6 [Caenorhabditis elegans] 2.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR000073 EMBL-EBI Alpha/beta hydrolase fold 1.7E-20
Pfam IPR000073 EMBL-EBI Alpha/beta hydrolase fold 1.7E-20
Sequence
Target Sequence 
>C. ELEGANS:173820_S_AT
aacacttgctgctcatgattggggagcaattgtttgttggcgtgttgcaatgttacattc
aaatcttatcgaccgacttgtcatttgtaatgttcctcatccatttgcattttttgaagt
ctacaatatgagtaaagaacaaagaaataaaagctggtatatttatctgttccagtctca
atacattccagaaatcgcaatgagatctaataaaatgaaaatgttagaggcaatgtttag
agggtcaaaagctggaatccggaattcggaaaacttcacagatgaggatatgttggcatg
gaaacatgttttcagtcagccaggcggaacaactggtccattaaactattatcgagattt
attcaatgctcctgctattcctcgaaaacttcaaattgttcagccgaaagtattgattct
ttggggtgatgaagatgcttttttggataaaaaaggagctgaattatctgtccagttttg
ccgagattgtcgtgttcaaatgatccgcggagcatctcattgggttcaacaagatcagcc
acaacttgtcaatgtatatatggagcaattcatgaacgaagattcctacagacctatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACTTGCTGCTCATGATTGGGGA 681 133 451 Antisense
AAATCTTATCGACCGACTTGTCATT 260 117 511 Antisense
TTCCTCATCCATTTGCATTTTTTGA 203 701 543 Antisense
ATCTGTTCCAGTCTCAATACATTCC 705 33 615 Antisense
GAAACATGTTTTCAGTCAGCCAGGC 76 355 751 Antisense
GATTTATTCAATGCTCCTGCTATTC 196 429 806 Antisense
TCCTGCTATTCCTCGAAAACTTCAA 386 593 820 Antisense
CTGTCCAGTTTTGCCGAGATTGTCG 410 235 918 Antisense
GTCGTGTTCAAATGATCCGCGGAGC 302 473 939 Antisense
CGCGGAGCATCTCATTGGGTTCAAC 191 243 956 Antisense
GAACGAAGATTCCTACAGACCTATT 140 347 1024 Antisense
Sequence Source Affymetrix Proprietary Database