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[173815_s_at]

Description AV195231 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C14F5.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV195231 /WB_GENE_ID=C14F5.3 /WP=CE01782 /CHR=X /FEA=Genomic Cluster /DEF=troponin T; Caenorhabditis elegans cDNA clone:yk639d10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 92      6grp_total > 77      4grp_total > 11      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1010
1 2 3 4 range
A 286.3
(-2.1)
P 		328.2
(-1.7)
P 		185.2
(-3)
P 		864.4
(3)
P 		679
B 318
(-2)
P 		299.1
(-2.1)
P 		147.5
(-3)
P 		1157.8
(3)
P 		1010
C 279.8
(-2.3)
P 		262
(-2.5)
P 		196.2
(-3)
P 		935.1
(3)
P 		739
avr 294.7
(-2.1) 		296.4
(-2.1) 		176.3
(-3) 		985.8
(3) 		810

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 282.1
(-1.4)
P 		299.4
(-1.1)
P 		191.2
(-3)
P 		255.4
(-1.9)
P 		323
(-0.7)
P 		529.4
(3)
P 		338
B 255.9
(-3)
P 		274.6
(-2.5)
P 		257.6
(-3)
P 		328.8
(-1)
P 		263.9
(-2.8)
P 		478
(3)
P 		222
C 280.4
(-1.1)
P 		277.2
(-1.2)
P 		213.7
(-3)
P 		300.8
(-0.5)
P 		299.3
(-0.6)
P 		424.4
(3)
P 		211
avr 272.8
(-1.8) 		283.7
(-1.5) 		220.8
(-3) 		295
(-1.3) 		295.4
(-1.3) 		477.3
(3) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 104.2
(1.3)
P 		71.2
(-1.2)
P 		48.4
(-3)
P 		126.5
(3)
P 		78
B 101.4
(-1.1)
P 		73.9
(-1.9)
P 		34.2
(-3)
P 		246.7
(3)
P 		213
C 92.6
(-1.4)
P 		75.3
(-2.5)
P 		68.4
(-3)
P 		157.7
(3)
P 		89
avr 99.4
(-0.7) 		73.5
(-1.9) 		50.3
(-3) 		177
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 52
(-2.3)
P 		106.5
(1.5)
P 		41.6
(-3)
P 		64.8
(-1.4)
P 		97.5
(0.8)
P 		128.9
(3)
P 		87
B 89
(-1.6)
P 		91.4
(-1.5)
P 		62.6
(-3)
P 		87.1
(-1.7)
P 		107.2
(-0.7)
P 		178.2
(3)
P 		116
C 103.9
(0.4)
P 		84.6
(-0.9)
P 		54.4
(-3)
P 		60.5
(-2.6)
P 		96.8
(-0.1)
P 		142.1
(3)
P 		88
avr 81.6
(-1.2) 		94.2
(-0.4) 		52.9
(-3) 		70.8
(-1.9) 		100.5
(-0) 		149.7
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173815_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25951
Sequence Type Exemplar sequence
Representative Public ID AV195231 NCBI
Target Description AV195231 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C14F5.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV195231 /WB_GENE_ID=C14F5.3 /WP=CE01782 /CHR=X /FEA=Genomic Cluster /DEF=troponin T; Caenorhabditis elegans cDNA clone:yk639d10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076936(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076936 NCBI Caenorhabditis elegans TropoNin T family member (tnt-3) (tnt-3) mRNA, complete cds. 10/11 None
GENEFINDER00000042709 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7937764:7944484:-1 9/11 None
C14F5.3a ENSEMBL cdna:known chromosome:CEL140:X:7937590:7944484:-1 gene:C14F5.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171736 6/11 Cross Hyb Matching Probes None
NM_076937 2/11 Cross Hyb Matching Probes None
SNAP00000042704 2/11 Cross Hyb Matching Probes None
C14F5.3c.1 6/11 Cross Hyb Matching Probes None
C14F5.3b 2/11 Cross Hyb Matching Probes None
C14F5.3c.2 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181052 3 1 NM_076936 173815_s_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7937815-7945610(-) 97.63 100.0
Public Domain and Genome References
Ensembl C14F5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T15496 hypothetical protein C14F5.3 - Caenorhabditis elegans 0.0
blast AAT92083 Troponin t protein 3, isoform b [Caenorhabditis elegans] ref|NP_509338.2| TropoNin T family member (tnt-3) [Caenorhabditis elegans] 0.0
blast CAE70324 Hypothetical protein CBG16852 [Caenorhabditis briggsae] 0.0
blast AAT92082 Troponin t protein 3, isoform a [Caenorhabditis elegans] ref|NP_509337.2| TropoNin T family member (tnt-3) [Caenorhabditis elegans] 1.0E-139
blast T15496 hypothetical protein C14F5.3 - Caenorhabditis elegans 1.0E-102
blast AAT92083 Troponin t protein 3, isoform b [Caenorhabditis elegans] ref|NP_509338.2| TropoNin T family member (tnt-3) [Caenorhabditis elegans] 7.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR001978 EMBL-EBI Troponin 1.4E-9
Pfam IPR001978 EMBL-EBI Troponin 2.5E-12
Sequence
Target Sequence 
>C. ELEGANS:173815_S_AT
atccgaagttccacaaagcgagctgaaggccaagataaaggagcttcatcagagaatatg
caaactcgagaccgagaagtacgatctcgagaaacgtcacgaacggcaagagtacgagat
gaaagagctcaacgagcgtcaacgtcaagtcactcgcaattcggctctcaagaaaggaat
tgatcccgctgaagttggaaacaccagatatccggcaaaagtccaaattgtctctaagta
cgatcgtcaggttgaccgtcgaaacttccgtgagcgtcgttccgtgttcgacaagagaaa
tgctcacccatgcttccctggtgttccaccccctccggctctttatgagaaagttgtgct
ggctgttgagactaaaaaactggataccgacgcttatttcgattggctcaattccttcaa
ttacattgctccccaaagtctcaatattatcagtgctcgtgacgacattcatgcgtattt
gaacagtccagatagatgtccaaggaaccaacaatctgtacttctcaacccgttttcact
cctagacgactttcaattccagctgcgtttctcaaacaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCGAAGTTCCACAAAGCGAGCTG 658 37 3175 Antisense
GTCAACGTCAAGTCACTCGCAATTC 211 465 3312 Antisense
GATACCGACGCTTATTTCGATTGGC 703 421 3557 Antisense
TTCGATTGGCTCAATTCCTTCAATT 361 693 3572 Antisense
TCCTTCAATTACATTGCTCCCCAAA 527 571 3587 Antisense
TGCTCCCCAAAGTCTCAATATTATC 629 581 3601 Antisense
GTGCTCGTGACGACATTCATGCGTA 412 479 3627 Antisense
GAACCAACAATCTGTACTTCTCAAC 552 343 3679 Antisense
TTTTCACTCCTAGACGACTTTCAAT 697 675 3707 Antisense
AGACGACTTTCAATTCCAGCTGCGT 467 69 3718 Antisense
TCCAGCTGCGTTTCTCAAACAAGGA 679 587 3732 Antisense
Sequence Source Affymetrix Proprietary Database