[Home] | [Total List]

[173814_at]

Description AV196071 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F14B4.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196071 /WB_GENE_ID=F14B4.2 /WP=CE05628 /CHR=1 /FEA=Genomic Cluster /DEF=hexokinase; Caenorhabditis elegans cDNA clone:yk649e12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 78      6grp_total > 96      4grp_total > 46      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1072
1 2 3 4 range
A 1872.5
(3)
P 		1153.8
(-1.1)
P 		960
(-2.2)
P 		822.9
(-3)
P 		1050
B 1676.6
(3)
P 		968.4
(-2)
P 		846.4
(-2.8)
P 		819.8
(-3)
P 		857
C 1669.9
(3)
P 		1022
(-1.5)
P 		1050
(-1.3)
P 		800.4
(-3)
P 		870
avr 1739.7
(3) 		1048.1
(-1.5) 		952.1
(-2.1) 		814.4
(-3) 		925

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 996
1 2 3 4 5 6 range
A 1154.4
(-3)
P 		1375.4
(-1.7)
P 		1370.2
(-1.7)
P 		1429.8
(-1.3)
P 		2051.9
(2.4)
P 		2150.8
(3)
P 		996
B 1223.1
(-3)
P 		1287.6
(-2.5)
P 		1424.5
(-1.5)
P 		1536.2
(-0.7)
P 		1952.5
(2.4)
P 		2027.5
(3)
P 		804
C 1385.8
(-2.3)
P 		1297.9
(-3)
P 		1716.1
(0.4)
P 		1685
(0.1)
P 		2028.5
(2.9)
P 		2045.9
(3)
P 		748
avr 1254.4
(-3) 		1320.3
(-2.5) 		1503.6
(-1.2) 		1550.3
(-0.8) 		2011
(2.5) 		2074.7
(3) 		820
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 561
1 2 3 4 range
A 681.8
(3)
P 		250.5
(-1.6)
P 		251
(-1.6)
P 		120.5
(-3)
P 		561
B 534.7
(3)
P 		239.2
(-1.9)
P 		196.1
(-2.6)
P 		174.7
(-3)
P 		360
C 552.8
(3)
P 		293.8
(-0.7)
P 		365.9
(0.3)
P 		135
(-3)
P 		418
avr 589.8
(3) 		261.2
(-1.4) 		271
(-1.3) 		143.4
(-3) 		446

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 581
1 2 3 4 5 6 range
A 212.8
(-3)
P 		489.2
(1.1)
P 		298.4
(-1.7)
P 		362.6
(-0.8)
P 		619.2
(3)
P 		523.7
(1.6)
P 		406
B 425.6
(-1.9)
P 		428.6
(-1.9)
P 		345.9
(-3)
P 		406.9
(-2.2)
P 		793.3
(3)
P 		756.1
(2.5)
P 		447
C 513.6
(0)
P 		396
(-2)
P 		436.8
(-1.3)
P 		338.9
(-3)
P 		656.4
(2.5)
P 		684.9
(3)
P 		346
avr 384
(-2.6) 		437.9
(-1.6) 		360.4
(-3) 		369.5
(-2.8) 		689.6
(3) 		654.9
(2.4) 		329
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173814_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22668
Sequence Type Exemplar sequence
Representative Public ID AV196071 NCBI
Target Description AV196071 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F14B4.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196071 /WB_GENE_ID=F14B4.2 /WP=CE05628 /CHR=1 /FEA=Genomic Cluster /DEF=hexokinase; Caenorhabditis elegans cDNA clone:yk649e12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025936(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025936 NCBI Caenorhabditis elegans F14B4.2b (hexokinase) mRNA, complete cds. 11/11 None
F14B4.2b ENSEMBL cdna:known chromosome:CEL140:I:9279567:9286812:-1 gene:F14B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172751 2 1 NM_001025936 173814_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9279597-9281836(-) 100.0 100.0
Public Domain and Genome References
Ensembl F14B4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04733 Hypothetical protein F14B4.2b [Caenorhabditis elegans] ref|NP_001021107.1| F14B4.2b [Caenorhabditis elegans] 0.0
blast CAA99826 Hypothetical protein F14B4.2a [Caenorhabditis elegans] ref|NP_001021106.1| F14B4.2a [Caenorhabditis elegans] 0.0
blast CAE72321 Hypothetical protein CBG19465 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001312 EMBL-EBI Hexokinase 2.1E-109
Pfam IPR001312 EMBL-EBI Hexokinase 7.0E-92
Sequence
Target Sequence 
>C. ELEGANS:173814_AT
tcgtccaatcagtagtctcgtcgattctcatctgtttaaaattcgctttctgtcactttc
acccatttcatcgagctttatccctcacctaggccccgcccacacttgaaacaaacttcc
aatagattcgaatacgggatatacttttttcttattttttaaaacattctccaatttcta
ggcataactgtaccaatttagagcacccatgcatcctcccttactaactcctttcttcat
caaacgtataaaccactaacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCCAATCAGTAGTCTCGTCGAT 540 605 1502 Antisense
TCTCGTCGATTCTCATCTGTTTAAA 207 611 1517 Antisense
TAAAATTCGCTTTCTGTCACTTTCA 69 641 1538 Antisense
TTTCACCCATTTCATCGAGCTTTAT 14 673 1558 Antisense
CCATTTCATCGAGCTTTATCCCTCA 593 269 1564 Antisense
CGCCCACACTTGAAACAAACTTCCA 271 255 1598 Antisense
AAAACATTCTCCAATTTCTAGGCAT 349 131 1662 Antisense
AATTTCTAGGCATAACTGTACCAAT 234 175 1674 Antisense
AACTGTACCAATTTAGAGCACCCAT 422 143 1687 Antisense
CAATTTAGAGCACCCATGCATCCTC 242 181 1695 Antisense
CATCAAACGTATAAACCACTAACCT 512 209 1739 Antisense
Sequence Source Affymetrix Proprietary Database