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[173812_at] ETS protein

Description AV191718 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T08H4.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV191718 /WB_GENE_ID=T08H4.3 /WP=CE19576 /CHR=2 /FEA=Genomic Cluster /DEF=ETS protein; Caenorhabditis elegans cDNA clone:yk597b2 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 18      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_total > 18      4grp_total > 38      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 507.7
(3)
P 		111.8
(-3)
P 		131.1
(-2.7)
P 		253.8
(-0.8)
P 		396
B 263.7
(3)
P 		184.4
(-0.6)
P 		132.8
(-3)
P 		237.1
(1.8)
P 		131
C 408.7
(3)
P 		302.8
(0.4)
P 		163.7
(-3)
P 		238.4
(-1.2)
P 		245
avr 393.4
(3) 		199.7
(-1.6) 		142.5
(-3) 		243.1
(-0.6) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 275.4
(3)
P 		182.3
(-0.2)
P 		130.1
(-2)
P 		101.8
(-3)
P 		148.3
(-1.4)
P 		111.8
(-2.7)
P 		174
B 278.6
(3)
P 		115.6
(-1.7)
P 		72.7
(-3)
P 		108.2
(-2)
P 		104.1
(-2.1)
P 		95
(-2.4)
P 		206
C 289.5
(3)
P 		183.7
(0.3)
P 		97.8
(-2)
P 		70.6
(-2.7)
M 		120.1
(-1.4)
P 		57.9
(-3)
P 		232
avr 281.2
(3) 		160.5
(-0.8) 		100.2
(-2.6) 		93.5
(-2.8) 		124.2
(-1.9) 		88.2
(-3) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 184.8
(3)
P 		24.3
(-3)
P 		34.3
(-2.6)
P 		37.2
(-2.5)
P 		161
B 84.1
(3)
P 		45.5
(-1.3)
P 		30.8
(-3)
P 		50.5
(-0.8)
P 		53
C 135.3
(3)
P 		87.1
(-0)
P 		57
(-1.9)
P 		40.2
(-3)
P 		95
avr 134.7
(3) 		52.3
(-2.3) 		40.7
(-3) 		42.6
(-2.9) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 50.8
(0.8)
P 		64.8
(3)
P 		28.3
(-2.6)
P 		25.8
(-3)
P 		44.8
(-0.1)
P 		27.2
(-2.8)
P 		39
B 96.9
(3)
P 		38.5
(-1.4)
P 		17.7
(-3)
P 		28.7
(-2.2)
P 		42.3
(-1.1)
P 		35.4
(-1.7)
P 		79
C 107.3
(3)
P 		56.1
(-0.3)
P 		24.9
(-2.3)
P 		14.2
(-3)
M 		38.9
(-1.4)
P 		19.4
(-2.7)
P 		93
avr 85
(3) 		53.1
(-0.1) 		23.6
(-2.9) 		22.9
(-3) 		42
(-1.2) 		27.3
(-2.6) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173812_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23573
Sequence Type Exemplar sequence
Representative Public ID AV191718 NCBI
Target Description AV191718 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T08H4.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV191718 /WB_GENE_ID=T08H4.3 /WP=CE19576 /CHR=2 /FEA=Genomic Cluster /DEF=ETS protein; Caenorhabditis elegans cDNA clone:yk597b2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027155 NCBI Caenorhabditis elegans T08H4.3 (T08H4.3) mRNA, complete cds. 11/11 None
T08H4.3 ENSEMBL cdna:known chromosome:CEL140:II:4127905:4134861:-1 gene:T08H4.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4127914-4134833(-) 97.8 100.0
Public Domain and Genome References
Gene Title ETS protein
Gene Symbol ast-1
Ensembl T08H4.3
Entrez Gene 173749 Entrez gene
SwissProt Q22355 EMBL-EBI
WormBase CE19576 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC71120 Hypothetical protein T08H4.3 [Caenorhabditis elegans] ref|NP_001022326.1| T08H4.3 [Caenorhabditis elegans] 0.0
blast CAE74283 Hypothetical protein CBG21979 [Caenorhabditis briggsae] 1.0E-142
blast CAA47389 XLFli protein [Xenopus laevis] sp|P41157|FLI1_XENLA Retroviral integration site protein Fli-1 homolog 6.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR000418 EMBL-EBI Ets-domain 8.2E-60
Sequence
Target Sequence 
>C. ELEGANS:173812_AT
taattcctccaatctatgatctctcctaccttttgaagtgaacgggatttcttcatttta
taccaacttctttatttttgctctaccttaatttttcgtcttgatctctaataattcttt
aaacagtatgtccatctagtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTCCTCCAATCTATGATCTCTC 3 635 1158 Antisense
TGATCTCTCCTACCTTTTGAAGTGA 225 565 1174 Antisense
TCTCCTACCTTTTGAAGTGAACGGG 263 607 1179 Antisense
AGTGAACGGGATTTCTTCATTTTAT 181 59 1194 Antisense
TTCTTCATTTTATACCAACTTCTTT 234 689 1206 Antisense
ATACCAACTTCTTTATTTTTGCTCT 517 21 1217 Antisense
CAACTTCTTTATTTTTGCTCTACCT 112 189 1221 Antisense
TTTGCTCTACCTTAATTTTTCGTCT 76 669 1234 Antisense
CTACCTTAATTTTTCGTCTTGATCT 582 223 1240 Antisense
ATCTCTAATAATTCTTTAAACAGTA 249 33 1261 Antisense
TTTAAACAGTATGTCCATCTAGTCT 421 671 1275 Antisense
Sequence Source Affymetrix Proprietary Database