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[173810_at] D52 protein

Description AV197315 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F13E6.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV197315 /WB_GENE_ID=F13E6.1 /WP=CE03198 /CHR=X /FEA=Genomic Cluster /DEF=D52 protein; Caenorhabditis elegans cDNA clone:yk664g6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 46      6grp_total > 09      4grp_total > 52      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 792
1 2 3 4 range
A 2817.6
(-1)
P 		3348.6
(3)
P 		3139.5
(1.4)
P 		2557
(-3)
P 		792
B 3082.3
(3)
P 		2898
(0.4)
P 		2914.8
(0.7)
P 		2649.2
(-3)
P 		433
C 3090.9
(1)
P 		3293.5
(3)
P 		2898.8
(-0.8)
P 		2674.2
(-3)
P 		619
avr 2996.9
(1) 		3180
(3) 		2984.4
(0.9) 		2626.8
(-3) 		553

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1082
1 2 3 4 5 6 range
A 3133
(2.2)
P 		2843.1
(0)
P 		2704.7
(-1)
P 		2901.9
(0.5)
P 		3243.3
(3)
P 		2430.4
(-3)
P 		813
B 3283.9
(3)
P 		2423.1
(-3)
P 		2578
(-1.9)
P 		3117.3
(1.8)
P 		2778.7
(-0.5)
P 		2524.9
(-2.3)
P 		861
C 3437
(3)
P 		2610
(-1.6)
P 		2799.1
(-0.5)
P 		3158.6
(1.5)
P 		2672.7
(-1.2)
P 		2355.3
(-3)
P 		1082
avr 3284.6
(3) 		2625.4
(-1.7) 		2693.9
(-1.2) 		3059.3
(1.4) 		2898.2
(0.3) 		2436.9
(-3) 		848
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 652
1 2 3 4 range
A 1025.9
(3)
P 		726.9
(0.2)
P 		820.7
(1.1)
P 		374.3
(-3)
P 		652
B 982.9
(3)
P 		715.7
(-0.8)
P 		675.4
(-1.4)
P 		564.6
(-3)
P 		418
C 1023.2
(3)
P 		946.9
(2.2)
P 		1010.3
(2.9)
P 		450.9
(-3)
P 		572
avr 1010.7
(3) 		796.5
(0.7) 		835.5
(1.1) 		463.3
(-3) 		547

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 697
1 2 3 4 5 6 range
A 577.5
(-3)
P 		1011.2
(3)
P 		589
(-2.8)
P 		736
(-0.8)
P 		978.7
(2.6)
P 		591.7
(-2.8)
P 		434
B 1142.6
(3)
P 		806.5
(-0.9)
P 		626
(-3)
P 		825.7
(-0.7)
P 		1128.9
(2.8)
P 		941.5
(0.7)
P 		517
C 1274
(3)
P 		796.4
(-1.5)
P 		712.4
(-2.3)
P 		635.2
(-3)
P 		864.8
(-0.8)
P 		788.5
(-1.6)
P 		639
avr 998
(3) 		871.4
(0.9) 		642.5
(-3) 		732.3
(-1.5) 		990.8
(2.9) 		773.9
(-0.8) 		356
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173810_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25793
Sequence Type Exemplar sequence
Representative Public ID AV197315 NCBI
Target Description AV197315 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F13E6.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV197315 /WB_GENE_ID=F13E6.1 /WP=CE03198 /CHR=X /FEA=Genomic Cluster /DEF=D52 protein; Caenorhabditis elegans cDNA clone:yk664g6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077386 NCBI Caenorhabditis elegans F13E6.1 (F13E6.1) mRNA, complete cds. 11/11 None
F13E6.1 ENSEMBL cdna:known chromosome:CEL140:X:10675631:10677034:-1 gene:F13E6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10675663-10677027(-) 99.61 99.61
Public Domain and Genome References
Gene Title D52 protein
Ensembl F13E6.1
Entrez Gene 181265 Entrez gene
SwissProt P55326 EMBL-EBI
WormBase CE31474 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92122 Hypothetical protein F13E6.1 [Caenorhabditis elegans] ref|NP_509787.2| F13E6.1 [Caenorhabditis elegans] sp|P55326|YZG1_CAEEL Hypothetical protein F13E6.1 in chromosome X 7.0E-90
blast CAE60814 Hypothetical protein CBG04517 [Caenorhabditis briggsae] 5.0E-75
blast E89632 protein F13E6.1 [imported] - Caenorhabditis elegans 9.0E-55
Protein Domains
Database ID Description E-Value
scop a.4.5.Replication initiation protein All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Replication initiation protein 0.219999998807907
Pfam IPR007327 EMBL-EBI Tumor protein D52 2.5E-93
Sequence
Target Sequence 
>C. ELEGANS:173810_AT
aagccaatctcttaaattcattcatttcacataccaatatgttgtaaaaacacgtcacta
ctgggatatttcaatctaatcgtcttttcttcattctattcttttcctgtcattaatatc
gccactttgtgaatgattgcggctttttctgctgaaagtattcgataatgttttgaaatg
ttctgaatccgcatccgcatggcacatgtattcatacctatttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCAATCTCTTAAATTCATTCAT 352 149 773 Antisense
AATTCATTCATTTCACATACCAATA 71 177 787 Antisense
AACACGTCACTACTGGGATATTTCA 540 135 821 Antisense
TTTCAATCTAATCGTCTTTTCTTCA 444 673 841 Antisense
TAATCGTCTTTTCTTCATTCTATTC 623 635 849 Antisense
ATTCTATTCTTTTCCTGTCATTAAT 462 11 865 Antisense
CTGTCATTAATATCGCCACTTTGTG 228 239 879 Antisense
GAATGATTGCGGCTTTTTCTGCTGA 305 331 903 Antisense
TGAAATGTTCTGAATCCGCATCCGC 197 573 946 Antisense
CCGCATCCGCATGGCACATGTATTC 215 261 961 Antisense
GGCACATGTATTCATACCTATTTAT 589 533 973 Antisense
Sequence Source Affymetrix Proprietary Database