[Home] | [Total List]

[173809_s_at] G10 protein

Description AV189911 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C07A9.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV189911 /WB_GENE_ID=C07A9.2 /WP=CE00499 /CHR=3 /FEA=Genomic Cluster /DEF=G10 protein; Caenorhabditis elegans cDNA clone:yk564a7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 78      6grp_total > 88      4grp_total > 60      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 532
1 2 3 4 range
A 1091.1
(-0.8)
P 		1395.7
(3)
P 		1162.9
(0.1)
P 		917.8
(-3)
P 		478
B 1133.1
(-0)
P 		1175.5
(1.4)
P 		1223.7
(3)
P 		1043.4
(-3)
P 		180
C 1231.4
(3)
P 		995.1
(-0.9)
P 		1200.7
(2.5)
P 		863.9
(-3)
P 		368
avr 1151.9
(2) 		1188.8
(2.8) 		1195.8
(3) 		941.7
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1159
1 2 3 4 5 6 range
A 1234.2
(-1.1)
P 		1089.2
(-3)
P 		1322.1
(0)
P 		1304.9
(-0.2)
P 		1462.1
(1.8)
P 		1551.1
(3)
P 		462
B 1334.6
(-2.2)
P 		1253.1
(-2.8)
P 		1618.4
(-0.1)
P 		1224.5
(-3)
P 		1744.4
(0.8)
P 		2048.2
(3)
P 		824
C 1118.5
(-2.4)
P 		1167.5
(-2.2)
P 		1012.1
(-3)
P 		1328.2
(-1.4)
P 		1516
(-0.4)
P 		2171.4
(3)
P 		1159
avr 1229.1
(-2.5) 		1169.9
(-3) 		1317.5
(-1.8) 		1285.9
(-2.1) 		1574.2
(0.2) 		1923.6
(3) 		754
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 397.3
(3)
P 		303
(0.8)
P 		304
(0.9)
P 		134.3
(-3)
P 		263
B 361.3
(3)
P 		290.3
(-0.1)
P 		283.6
(-0.4)
P 		222.3
(-3)
P 		139
C 407.6
(2.8)
P 		286.1
(0.1)
P 		418.5
(3)
P 		145.7
(-3)
P 		273
avr 388.7
(3) 		293.1
(0.4) 		335.4
(1.6) 		167.4
(-3) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 536
1 2 3 4 5 6 range
A 227.5
(-3)
P 		387.4
(1.5)
P 		287.9
(-1.3)
P 		330.9
(-0.1)
P 		441.2
(3)
P 		377.7
(1.2)
P 		214
B 464.4
(-1.1)
P 		417.1
(-1.7)
P 		393
(-2.1)
P 		324.3
(-3)
P 		708.7
(2.2)
P 		763.7
(3)
P 		439
C 414.6
(-1)
P 		356.2
(-1.7)
P 		257.6
(-3)
P 		267.1
(-2.9)
P 		490.6
(-0)
P 		726.9
(3)
P 		469
avr 368.8
(-1.8) 		386.9
(-1.5) 		312.8
(-2.9) 		307.4
(-3) 		546.8
(1.6) 		622.8
(3) 		315
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173809_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23878
Sequence Type Exemplar sequence
Representative Public ID AV189911 NCBI
Target Description AV189911 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C07A9.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV189911 /WB_GENE_ID=C07A9.2 /WP=CE00499 /CHR=3 /FEA=Genomic Cluster /DEF=G10 protein; Caenorhabditis elegans cDNA clone:yk564a7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066743 NCBI Caenorhabditis elegans C07A9.2 (C07A9.2) mRNA, complete cds. 11/11 None
SNAP00000039329 ENSEMBL cdna:SNAP chromosome:CEL140:III:9694701:9695240:-1 11/11 None
GENEFINDER00000039341 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9694701:9695240:-1 11/11 None
C07A9.2.1 ENSEMBL cdna:known chromosome:CEL140:III:9694564:9695248:-1 gene:C07A9.2 11/11 None
C07A9.2.2 ENSEMBL cdna:known chromosome:CEL140:III:9694701:9696413:-1 gene:C07A9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9694633-9695237(-) 100.0 100.0
Public Domain and Genome References
Gene Title G10 protein
Ensembl C07A9.2
Entrez Gene 176368 Entrez gene
SwissProt P34313 EMBL-EBI
WormBase CE00499 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19868_AT G10 family protein at
ATH1-121501:254399_AT G10 family protein at
CANINE:1584513_X_AT similar to G10 protein homolog (EDG-2) cfa
CANINE:1584512_S_AT similar to G10 protein homolog (EDG-2) cfa
CANINE:1603909_X_AT similar to G10 protein homolog (EDG-2) cfa
CANINE:1601572_S_AT similar to G10 protein homolog (EDG-2) cfa
CANINE_2:CFA.7529.1.A1_AT similar to G10 protein homolog (EDG-2) cfa
CANINE_2:CFAAFFX.23181.1.S1_X_AT similar to G10 protein homolog (EDG-2) cfa
CANINE_2:CFAAFFX.3930.1.S1_AT similar to G10 protein homolog (EDG-2) cfa
CANINE_2:CFAAFFX.3930.1.S1_X_AT similar to G10 protein homolog (EDG-2) cfa
DROSOPHILA_2:1639060_AT lethal (1) 10Bb dm
DROSGENOME1:143212_AT lethal (1) 10Bb dm
CHICKEN:GGA.4641.1.S1_A_AT maternal G10 transcript gga
HG-U133_PLUS_2:205690_S_AT G10 protein hs
HG-U133A:205690_S_AT G10 protein hs
HG-FOCUS:205690_S_AT G10 protein hs
HG-U133A_2:205690_S_AT G10 protein hs
HG-U95AV2:39029_AT G10 protein hs
HU35KSUBD:RC_T40849_S_AT G10 protein hs
HUGENEFL:U11861_AT G10 protein hs
U133_X3P:G4503836_3P_S_AT G10 protein hs
U133_X3P:HS.278317.2.A1_3P_AT G10 protein hs
HG-U133A_2:215815_AT G10 protein hs
HG-U133_PLUS_2:215815_AT G10 protein hs
HG-U133A:215815_AT G10 protein hs
RG-U34A:AF058791_AT maternal G10 transcript rn
RAE230A:1387002_AT maternal G10 transcript rn
RAT230_2:1387002_AT maternal G10 transcript rn
YEAST_2:1770677_AT Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern Sc
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82338 Hypothetical protein C07A9.2 [Caenorhabditis elegans] ref|NP_499144.1| C07A9.2 [Caenorhabditis elegans] gb|AAG50215.1| G10 protein homolog [Caenorhabditis elegans] sp|P34313|G10_CAEEL G10 protein homolog 6.0E-86
blast CAE65151 Hypothetical protein CBG10019 [Caenorhabditis briggsae] 5.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR001748 EMBL-EBI G10 protein 4.3E-114
Sequence
Target Sequence 
>C. ELEGANS:173809_S_AT
atgtcactggccactaaactacgaagagttcgaaagtctccaccagagggatgggatttg
atcgagcccacactagaacagttcgaggcgaaaatgcgtgaagccgaaacagaaccacac
gaaggaaagcgaaaaactgaaattaactggccgattttcagaattcatcaccaacgatca
cgatacgtctatgacatgtactacaagaaagctgaaatttcccgtgaattgtacgaattc
tgcttaaccgccaagttcgctgacgcagcacttatcgcgaaatggaagaagcaaggatac
gagaacctgtgttgcgttaaatgtgtgaatactcgagacagtaatttcggcactgcgtgc
atctgtcgagttccaaaaagcaaacttgatgcggagcgtgttatcgaatgcgttcattgt
ggatgtcatggttgctctggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCACTGGCCACTAAACTACGAA 62 49 14 Antisense
AGAGTTCGAAAGTCTCCACCAGAGG 696 67 38 Antisense
ATTTGATCGAGCCCACACTAGAACA 36 19 69 Antisense
GGCCGATTTTCAGAATTCATCACCA 644 541 162 Antisense
CGAATTCTGCTTAACCGCCAAGTTC 313 251 247 Antisense
TTCGCTGACGCAGCACTTATCGCGA 307 695 269 Antisense
GGATACGAGAACCTGTGTTGCGTTA 190 511 308 Antisense
AATTTCGGCACTGCGTGCATCTGTC 310 175 356 Antisense
GTGCATCTGTCGAGTTCCAAAAAGC 528 477 370 Antisense
GCGGAGCGTGTTATCGAATGCGTTC 284 293 404 Antisense
GTGGATGTCATGGTTGCTCTGGATG 63 491 432 Antisense
Sequence Source Affymetrix Proprietary Database