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[173807_at]

Description AV197433 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y6B3A.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV197433 /WB_GENE_ID=Y6B3A.1 /WP=CE24576 /CHR=1 /FEA=Genomic Cluster /DEF=Sec7 domain; Caenorhabditis elegans cDNA clone:yk666c8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_high_8_8 > 49      6grp_highest_nonorm > 80      6grp_total > 17      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 284.2
(3)
P 		216.3
(-0.3)
P 		220.6
(-0.1)
P 		161.9
(-3)
P 		122
B 283.4
(3)
P 		242.2
(1.7)
P 		194.7
(0.2)
P 		91
(-3)
P 		192
C 274.4
(3)
P 		179.1
(0.1)
P 		192
(0.5)
P 		74
(-3)
A 		200
avr 280.7
(3) 		212.5
(0.6) 		202.4
(0.3) 		109
(-3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 374
(3)
P 		236.1
(-0.3)
P 		186.4
(-1.5)
P 		124.8
(-3)
P 		234.7
(-0.4)
P 		185.6
(-1.5)
P 		249
B 281.5
(3)
P 		249.2
(1.6)
P 		168.4
(-1.7)
P 		265.3
(2.3)
P 		138
(-3)
P 		180.8
(-1.2)
P 		144
C 284.7
(2.7)
P 		290.3
(3)
P 		238.1
(0.3)
P 		198.8
(-1.7)
P 		173.6
(-3)
P 		265.2
(1.7)
P 		117
avr 313.4
(3) 		258.5
(0.5) 		197.6
(-2.3) 		196.3
(-2.4) 		182.1
(-3) 		210.5
(-1.7) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 103.5
(3)
P 		47
(-1.2)
P 		57.7
(-0.4)
P 		23.7
(-3)
P 		80
B 90.4
(3)
P 		59.8
(0.4)
P 		45.1
(-0.8)
P 		19.4
(-3)
P 		71
C 90.8
(3)
P 		51.5
(-0)
P 		66.9
(1.2)
P 		12.5
(-3)
A 		78
avr 94.9
(3) 		52.8
(-0.3) 		56.6
(-0) 		18.5
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 68.9
(1.3)
P 		84
(3)
P 		40.6
(-2)
P 		31.6
(-3)
P 		70.8
(1.5)
P 		45.2
(-1.4)
P 		52
B 98
(3)
P 		82.9
(1.4)
P 		40.9
(-3)
P 		70.3
(0.1)
P 		56
(-1.4)
P 		67.4
(-0.2)
P 		57
C 105.5
(3)
P 		88.6
(1.5)
P 		60.6
(-1.1)
P 		40
(-3)
P 		56.2
(-1.5)
P 		88.8
(1.5)
P 		66
avr 90.8
(3) 		85.2
(2.2) 		47.4
(-3) 		47.3
(-3) 		61
(-1.1) 		67.1
(-0.3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173807_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22822
Sequence Type Exemplar sequence
Representative Public ID AV197433 NCBI
Target Description AV197433 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y6B3A.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV197433 /WB_GENE_ID=Y6B3A.1 /WP=CE24576 /CHR=1 /FEA=Genomic Cluster /DEF=Sec7 domain; Caenorhabditis elegans cDNA clone:yk666c8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026627(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026627 NCBI Caenorhabditis elegans Y6B3A.1a (Y6B3A.1) mRNA, complete cds. 11/11 None
Y6B3A.1a ENSEMBL cdna:known chromosome:CEL140:I:13612021:13634317:-1 gene:Y6B3A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173231 2 1 NM_001026627 173807_at (11), 188695_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13611975-13634249(-) 99.48 100.0
Public Domain and Genome References
Ensembl Y6B3A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60434 Hypothetical protein Y6B3A.1a [Caenorhabditis elegans] emb|CAA21704.2| Hypothetical protein Y6B3A.1a [Caenorhabditis elegans] ref|NP_001021798.1| Y6B3A.1a [Caenorhabditis elegans] 0.0
blast CAE72590 Hypothetical protein CBG19779 [Caenorhabditis briggsae] 0.0
blast CAE66039 Hypothetical protein CBG11238 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000904 EMBL-EBI SEC7-like domain 7.2E-85
Sequence
Target Sequence 
>C. ELEGANS:173807_AT
aatttcacttgaagctagctccccacagctctgattaatttctcatttttgtgtggctct
tttgtatttaaattagattattcgctttattttcattattattattattattactgattt
caaacaaaaaaaattccattgttttcaaatggttgtgattcatcccatgctccccccgtc
aaataattctctactttttttttcgtttattgtgatattgattttttttttcctcccccg
catcccccttttttagacttaaattatttccagatatggctctacggtttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTCACTTGAAGCTAGCTCCCCA 385 175 4889 Antisense
GCTCCCCACAGCTCTGATTAATTTC 208 299 4906 Antisense
CCCACAGCTCTGATTAATTTCTCAT 121 259 4910 Antisense
TAATTTCTCATTTTTGTGTGGCTCT 370 635 4924 Antisense
TTTTGTGTGGCTCTTTTGTATTTAA 236 679 4935 Antisense
ATTAGATTATTCGCTTTATTTTCAT 395 13 4960 Antisense
TATTCGCTTTATTTTCATTATTATT 121 665 4967 Antisense
ATGGTTGTGATTCATCCCATGCTCC 510 51 5037 Antisense
TTTTTTTCGTTTATTGTGATATTGA 245 675 5085 Antisense
AATTATTTCCAGATATGGCTCTACG 178 175 5150 Antisense
TCCAGATATGGCTCTACGGTTTTTC 150 591 5157 Antisense
Sequence Source Affymetrix Proprietary Database