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[173806_s_at]

Description CEK038H7R /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F02A9.4A /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33966 /WB_GENE_ID=F02A9.4A /WP=CE00136 /CHR=3 /FEA=Genomic Cluster /DEF=Propionyl-CoA carboxylase; C.elegans cDNA clone yk38h7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 21      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 33      6grp_total > 41      4grp_total > 59      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1649
1 2 3 4 range
A 1653.5
(1.2)
P 		2083.1
(3)
P 		1969.4
(2.5)
P 		674.1
(-3)
P 		1409
B 1609.8
(0.8)
P 		1787.1
(1.4)
P 		2182
(3)
P 		655.4
(-3)
P 		1527
C 1677.1
(1.2)
P 		1864
(1.9)
P 		2155.9
(3)
P 		533.4
(-3)
P 		1623
avr 1646.8
(1.2) 		1911.4
(2.2) 		2102.4
(3) 		621
(-3) 		1481

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1244
1 2 3 4 5 6 range
A 1697.5
(0.6)
P 		1841.7
(1.6)
P 		1886.9
(1.9)
P 		2047.8
(3)
P 		1221.6
(-2.7)
P 		1182.2
(-3)
P 		866
B 1581.7
(-0.2)
P 		1825.4
(1.1)
P 		2176.5
(3)
P 		1651.2
(0.1)
P 		1270.6
(-1.9)
P 		1071.6
(-3)
P 		1105
C 2148.9
(2.1)
P 		1880.9
(0.7)
P 		2315.5
(3)
P 		1836.7
(0.5)
P 		1304.6
(-2.3)
P 		1177.8
(-3)
P 		1138
avr 1809.4
(1.1) 		1849.3
(1.3) 		2126.3
(3) 		1845.2
(1.3) 		1265.6
(-2.3) 		1143.9
(-3) 		982
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 662
1 2 3 4 range
A 602
(3)
P 		452.2
(1.2)
P 		514.8
(2)
P 		98.7
(-3)
P 		503
B 513.4
(3)
P 		441.4
(1.8)
P 		505.6
(2.9)
P 		139.7
(-3)
P 		374
C 555.2
(1.2)
P 		535.9
(1)
P 		751.4
(3)
P 		89.9
(-3)
P 		662
avr 556.9
(2.6) 		476.5
(1.6) 		590.6
(3) 		109.4
(-3) 		481

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 509
1 2 3 4 5 6 range
A 312.9
(-2.6)
P 		655
(3)
P 		410.9
(-1)
P 		519.4
(0.8)
P 		368.6
(-1.7)
P 		287.8
(-3)
P 		367
B 550.4
(1.4)
P 		607.6
(3)
P 		528.5
(0.7)
P 		437.3
(-1.9)
P 		516.2
(0.4)
P 		399.6
(-3)
P 		208
C 796.5
(3)
P 		573.9
(-0.1)
P 		589.3
(0.1)
P 		369.4
(-3)
P 		422.2
(-2.3)
P 		394.3
(-2.7)
P 		427
avr 553.3
(1.6) 		612.2
(3) 		509.6
(0.6) 		442
(-1.1) 		435.7
(-1.2) 		360.6
(-3) 		252
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173806_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23940
Sequence Type Exemplar sequence
Representative Public ID CEK038H7R NCBI
Target Description CEK038H7R /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F02A9.4A /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33966 /WB_GENE_ID=F02A9.4A /WP=CE00136 /CHR=3 /FEA=Genomic Cluster /DEF=Propionyl-CoA carboxylase; C.elegans cDNA clone yk38h7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066612(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066612 NCBI Caenorhabditis elegans F02A9.4a (F02A9.4) mRNA, complete cds. 11/11 None
SNAP00000002185 ENSEMBL cdna:SNAP chromosome:CEL140:III:9084794:9089279:-1 11/11 None
GENEFINDER00000002191 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9084794:9089279:-1 11/11 None
F02A9.4a ENSEMBL cdna:known chromosome:CEL140:III:9086746:9089281:-1 gene:F02A9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176285 2 1 NM_066611 174359_at (11), 187436_s_at (9)
NM_066612 173806_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9087024-9089276(-) 100.0 100.0
Public Domain and Genome References
Ensembl F02A9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA79618 Hypothetical protein F02A9.4a [Caenorhabditis elegans] ref|NP_499013.1| F02A9.4a [Caenorhabditis elegans] sp|P34385|YLPC_CAEEL Hypothetical protein F02A9.4a in chromosome III 0.0
blast CAE62669 Hypothetical protein CBG06810 [Caenorhabditis briggsae] 0.0
blast NP_998092 methylcrotonoyl-Coenzyme A carboxylase 2 (beta) [Danio rerio] gb|AAH67577.1| Hypothetical protein zgc:85685 [Danio rerio] 0.0
Protein Families
Method ID Description E-Value
ec ACCD_ECOLI (P08193) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC 6.4.1.2) (ACCase beta chain) 0.14
ec ACCD_ECOLI (P08193) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC 6.4.1.2) (ACCase beta chain) 2.0E-73
ec ACCD_ECOLI (P08193) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC 6.4.1.2) (ACCase beta chain) 0.13
Protein Domains
Database ID Description E-Value
Pfam IPR000022 EMBL-EBI Carboxyl transferase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173806_S_AT
gcttgtgaccggatttgctactatttatgggcagcgtgtaggaattctagctaataatgg
tgttctgtttgctgaaagtgccatgaaaggttctcattttattgagctgtgttgtcaacg
gaagattcctcttcttttccttcaaaatatcactggattcatggttggaagagatgctga
agccggcggaattgctaaacatggagctaaattagttactgcggtcgcttgtgcaaaggt
tccaaaaatcaccgttctcgtcggaggttcatacggagctggaaactacggaatgtgtgg
aagaggatacagtccaagatatgtgttcatgtggcctaattctcgaatttccgtaatggg
tggagaacaggcagcgaatgtactttcaactgttcaaaaagagaaaaagaagcgcgaggg
agctgactggacggatcagcaagatcttgagcttcgtaaacctgtcgaggaaaagtttga
gaaggaaggacacccatactttgcttccgctcgtctttgggatgatggagttatcgatcc
aaaagacaccagaaaggttctcggactcgctttccagtcaaccctgcaaaagccaatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTGTGACCGGATTTGCTACTATT 298 307 1210 Antisense
TGCGGTCGCTTGTGCAAAGGTTCCA 561 581 1429 Antisense
ATCACCGTTCTCGTCGGAGGTTCAT 473 27 1457 Antisense
TGTGTTCATGTGGCCTAATTCTCGA 595 555 1531 Antisense
GCAGCGAATGTACTTTCAACTGTTC 218 315 1580 Antisense
AGAAGCGCGAGGGAGCTGACTGGAC 626 73 1617 Antisense
AGATCTTGAGCTTCGTAAACCTGTC 270 65 1651 Antisense
AAGGAAGGACACCCATACTTTGCTT 541 157 1691 Antisense
CTTCCGCTCGTCTTTGGGATGATGG 33 221 1713 Antisense
CACCAGAAAGGTTCTCGGACTCGCT 458 201 1756 Antisense
CAGTCAACCCTGCAAAAGCCAATCC 654 203 1784 Antisense
Sequence Source Affymetrix Proprietary Database