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[173800_at]

Description C67084 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T10A3.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C67084 /WB_GENE_ID=T10A3.1 /WP=CE04931 /CHR=X /FEA=Genomic Cluster /DEF=C2 domain of protein kinase C; C.elegans cDNA clone yk253c4 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 52      4grp_high_8_8 > 25      6grp_highest_nonorm > 90      6grp_total > 26      4grp_total > 39      6grp_highest_sub > 01_02      6grp_cgc > 14      6grp_high1_sub > 01_02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 343.7
(3)
P 		102.8
(-2.3)
P 		72.4
(-3)
P 		138.5
(-1.5)
P 		271
B 171.7
(3)
P 		96.7
(-1.5)
P 		71.4
(-3)
P 		167.5
(2.7)
P 		100
C 287.5
(3)
P 		139.3
(-2.2)
P 		116.3
(-3)
P 		144.2
(-2)
P 		171
avr 267.6
(3) 		112.9
(-2.1) 		86.7
(-3) 		150.1
(-0.9) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 89.6
(-3)
P 		183.1
(3)
P 		130.3
(-0.4)
P 		92.8
(-2.8)
P 		144.9
(0.5)
P 		107.9
(-1.8)
P 		94
B 324.8
(3)
P 		226.7
(0.3)
P 		107.8
(-2.9)
P 		139.9
(-2)
P 		104
(-3)
P 		121.9
(-2.5)
P 		221
C 240.5
(3)
P 		208.7
(1.6)
P 		131.3
(-1.7)
P 		116.4
(-2.3)
P 		101.1
(-3)
P 		128.1
(-1.8)
P 		139
avr 218.3
(3) 		206.2
(2.3) 		123.1
(-2.6) 		116.4
(-3) 		116.7
(-3) 		119.3
(-2.8) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 125.1
(3)
P 		22.3
(-2.8)
P 		18.9
(-3)
P 		20.3
(-2.9)
P 		106
B 54.8
(3)
P 		23.9
(-1.8)
P 		16.5
(-3)
P 		35.7
(0)
P 		38
C 95.2
(3)
P 		40.1
(-1.7)
P 		40.5
(-1.6)
P 		24.3
(-3)
P 		71
avr 91.7
(3) 		28.8
(-2.7) 		25.3
(-3) 		26.8
(-2.9) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 16.5
(-3)
P 		65.1
(3)
P 		28.4
(-1.5)
P 		23.5
(-2.1)
P 		43.7
(0.4)
P 		26.3
(-1.8)
P 		49
B 113
(3)
P 		75.5
(0.4)
P 		26.2
(-3)
P 		37.1
(-2.2)
P 		42.2
(-1.9)
P 		45.5
(-1.7)
P 		87
C 89.1
(3)
P 		63.7
(0.7)
P 		33.4
(-2.1)
P 		23.4
(-3)
P 		32.7
(-2.2)
P 		42.9
(-1.2)
P 		66
avr 72.9
(3) 		68.1
(2.4) 		29.3
(-2.8) 		28
(-3) 		39.5
(-1.5) 		38.2
(-1.6) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173800_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25787
Sequence Type Exemplar sequence
Representative Public ID C67084 NCBI
Target Description C67084 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T10A3.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C67084 /WB_GENE_ID=T10A3.1 /WP=CE04931 /CHR=X /FEA=Genomic Cluster /DEF=C2 domain of protein kinase C; C.elegans cDNA clone yk253c4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029730(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029730 NCBI Caenorhabditis elegans UNCoordinated family member (unc-10) (unc-10) mRNA, complete cds. 11/11 None
T10A3.1b ENSEMBL cdna:known chromosome:CEL140:X:7272283:7280247:-1 gene:T10A3.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180990 2 1 NM_001029730 173800_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7272292-7276513(-) 100.0 100.0
Public Domain and Genome References
Ensembl T10A3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69088 Uncoordinated protein 10, isoform b [Caenorhabditis elegans] ref|NP_001024901.1| UNCoordinated family member (unc-10) [Caenorhabditis elegans] 0.0
blast AAB37028 Uncoordinated protein 10, isoform a [Caenorhabditis elegans] ref|NP_741831.1| UNCoordinated family member (unc-10) [Caenorhabditis elegans] gb|AAK49331.1| Rab3-interacting molecule UNC-10 [Caenorhabditis elegans] sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim) (Uncoordinated protein 10) 0.0
blast CAE65866 Hypothetical protein CBG11009 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 4.9E-9
Pfam IPR000008 EMBL-EBI C2 domain 1.1E-26
Sequence
Target Sequence 
>C. ELEGANS:173800_AT
ggtgctcagcagtaacaaatttcatatgtttttgtttgttttttgtcttaattaccacag
gtcatttctctctttctatcgtcattttcttgtcattttttctttcttgagcattggcaa
caaatttattcgttatgcattatgggtacttgtttctcgctttttaatgtataatctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCTCAGCAGTAACAAATTTCAT 488 501 2561 Antisense
TTGTTTTTTGTCTTAATTACCACAG 319 705 2596 Antisense
AATTACCACAGGTCATTTCTCTCTT 579 175 2610 Antisense
TTCTATCGTCATTTTCTTGTCATTT 483 691 2634 Antisense
TTTTTCTTTCTTGAGCATTGGCAAC 270 675 2657 Antisense
GAGCATTGGCAACAAATTTATTCGT 617 387 2669 Antisense
ATTTATTCGTTATGCATTATGGGTA 447 15 2684 Antisense
ATTATGGGTACTTGTTTCTCGCTTT 312 11 2699 Antisense
GTACTTGTTTCTCGCTTTTTAATGT 683 459 2706 Antisense
CTTGTTTCTCGCTTTTTAATGTATA 624 217 2709 Antisense
CTCGCTTTTTAATGTATAATCTCAA 639 231 2716 Antisense
Sequence Source Affymetrix Proprietary Database