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[173799_at] trehalose phophate synthase

Description CEK001C1R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK54.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D32657 /WB_GENE_ID=ZK54.2 /WP=CE26342 /CHR=X /FEA=Genomic Cluster /DEF=trehalose phophate synthase; C.elegans cDNA clone yk1c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 55      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 66      6grp_total > 46      4grp_total > 47      6grp_highest_sub > Cu      6grp_cgc > 36      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 799
1 2 3 4 range
A 1439.1
(3)
P 		697.7
(-2.6)
P 		640.4
(-3)
P 		789.2
(-1.9)
P 		799
B 1258.3
(3)
P 		762.3
(-1.8)
P 		643
(-3)
P 		722.6
(-2.2)
P 		615
C 1422.8
(3)
P 		658.7
(-3)
P 		766.8
(-2.2)
P 		734.9
(-2.4)
P 		764
avr 1373.4
(3) 		706.2
(-2.8) 		683.4
(-3) 		748.9
(-2.4) 		690

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 846
1 2 3 4 5 6 range
A 1472.5
(0.8)
P 		1595.8
(2.2)
P 		1599.3
(2.3)
P 		1133.7
(-3)
P 		1538.1
(1.6)
P 		1663.2
(3)
P 		530
B 1874.4
(2.3)
P 		1557
(-0.1)
P 		1406.4
(-1.2)
P 		1676.1
(0.8)
P 		1169.3
(-3)
P 		1970.6
(3)
P 		801
C 1438.6
(0.6)
P 		1635.5
(2.9)
P 		1647.5
(3)
P 		1576.7
(2.2)
P 		1124.3
(-3)
P 		1475.5
(1)
P 		523
avr 1595.2
(1.5) 		1596.1
(1.5) 		1551.1
(0.9) 		1462.2
(-0.4) 		1277.2
(-3) 		1703.1
(3) 		426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 409
1 2 3 4 range
A 524
(3)
P 		151.4
(-2.5)
P 		167.4
(-2.2)
P 		115.5
(-3)
P 		409
B 401.3
(3)
P 		188.3
(-2.1)
P 		149
(-3)
P 		154
(-2.9)
P 		252
C 471
(3)
P 		189.4
(-1.9)
P 		267.3
(-0.5)
P 		123.9
(-3)
P 		347
avr 465.4
(3) 		176.4
(-2.2) 		194.6
(-1.9) 		131.1
(-3) 		334

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 463
1 2 3 4 5 6 range
A 271.4
(-3)
P 		567.6
(3)
P 		348.3
(-1.4)
P 		287.5
(-2.7)
P 		464.1
(0.9)
P 		404.9
(-0.3)
P 		296
B 652.2
(1.7)
P 		518.3
(-0.3)
P 		341.5
(-3)
P 		443.9
(-1.4)
P 		475.1
(-1)
P 		734.8
(3)
P 		393
C 533.2
(3)
P 		499.1
(2.1)
P 		419.3
(-0.2)
P 		317.1
(-3)
P 		363.8
(-1.7)
P 		493.9
(1.9)
P 		216
avr 485.6
(1.2) 		528.3
(2.5) 		369.7
(-2.4) 		349.5
(-3) 		434.3
(-0.4) 		544.5
(3) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173799_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26111
Sequence Type Exemplar sequence
Representative Public ID CEK001C1R NCBI
Target Description CEK001C1R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK54.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D32657 /WB_GENE_ID=ZK54.2 /WP=CE26342 /CHR=X /FEA=Genomic Cluster /DEF=trehalose phophate synthase; C.elegans cDNA clone yk1c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078430 NCBI Caenorhabditis elegans Trehalose 6-Phosphate Synthase family member (tps-1) (tps-1) mRNA, complete cds. 11/11 None
ZK54.2.4 ENSEMBL cdna:known chromosome:CEL140:X:17467030:17474447:-1 gene:ZK54.2 11/11 A 
ZK54.2.3 ENSEMBL cdna:known chromosome:CEL140:X:17467030:17474445:-1 gene:ZK54.2 11/11 A 
ZK54.2.1 ENSEMBL cdna:known chromosome:CEL140:X:17467047:17474445:-1 gene:ZK54.2 11/11 A 
ZK54.2.2 ENSEMBL cdna:known chromosome:CEL140:X:17467048:17474445:-1 gene:ZK54.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17467053-17473609(-) 100.0 100.0
Public Domain and Genome References
Gene Title trehalose phophate synthase
Gene Symbol tps-1
Ensembl ZK54.2
Entrez Gene 181778 Entrez gene
SwissProt Q23515 EMBL-EBI
WormBase CE30330 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5992 trehalose biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39395 Trehalose 6-phosphate synthase protein 1 [Caenorhabditis elegans] ref|NP_510831.2| Trehalose 6-Phosphate Synthase family member (tps-1) [Caenorhabditis elegans] 0.0
blast CAH18875 putative trehalose 6-phosphate synthase [Caenorhabditis elegans] emb|CAD54506.1| trehalose-6-phosphate synthase [Caenorhabditis elegans] pir||T29249 hypothetical protein ZK54.2 - Caenorhabditis elegans 0.0
blast CAE58687 Hypothetical protein CBG01861 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001830 EMBL-EBI Glycosyl transferase, family 20 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173799_AT
aacagcttcattattcgacatttctttttcttacatcaaaatatctaaattccagtatta
acctctttaataatattccatccaagtccatcccgacatttcaataccgtttctttttag
tttgcctggtgcacttttatgttttcatcatcataatacttgtaaatacagtgtctcttg
ttagattcctcatacttcccatccgcagccaaagttttgtcctcatgtatcatttctcta
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAGCTTCATTATTCGACATTTCT 278 137 3980 Antisense
TCGACATTTCTTTTTCTTACATCAA 540 601 3994 Antisense
TCTAAATTCCAGTATTAACCTCTTT 55 601 4023 Antisense
AATAATATTCCATCCAAGTCCATCC 7 171 4048 Antisense
AGTCCATCCCGACATTTCAATACCG 671 57 4064 Antisense
GTTTCTTTTTAGTTTGCCTGGTGCA 231 451 4088 Antisense
GCCTGGTGCACTTTTATGTTTTCAT 597 283 4103 Antisense
TACAGTGTCTCTTGTTAGATTCCTC 135 645 4146 Antisense
CTTGTTAGATTCCTCATACTTCCCA 647 217 4156 Antisense
TCCGCAGCCAAAGTTTTGTCCTCAT 132 595 4181 Antisense
TTGTCCTCATGTATCATTTCTCTAT 118 709 4196 Antisense
Sequence Source Affymetrix Proprietary Database