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[173797_at] alcohl dehydrogenase like

Description CEK031C5R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK829.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33457 /WB_GENE_ID=ZK829.7 /WP=CE18467 /CHR=4 /FEA=Genomic Cluster /DEF=alcohl dehydrogenase like; C.elegans cDNA clone yk31c5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 38      6grp_total > 74      4grp_total > 63      6grp_highest_sub > 04      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2312
1 2 3 4 range
A 5319.8
(1.4)
P 		4504.5
(-3)
P 		5622
(3)
P 		4762.7
(-1.6)
P 		1118
B 6816.7
(3)
P 		6653.5
(1.7)
P 		6752.1
(2.5)
P 		6045.7
(-3)
P 		771
C 6549
(3)
P 		5526.8
(-1)
P 		5470.6
(-1.3)
P 		5031.7
(-3)
P 		1517
avr 6228.5
(3) 		5561.6
(-1.2) 		5948.2
(1.2) 		5280
(-3) 		949

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3336
1 2 3 4 5 6 range
A 6988.2
(3)
P 		6124.4
(-2.4)
P 		6560.9
(0.3)
P 		6029.1
(-3)
P 		6633.3
(0.8)
P 		6400.9
(-0.7)
P 		959
B 5200.5
(-1.9)
P 		4615.7
(-3)
P 		5254.5
(-1.8)
P 		7929.5
(3)
P 		5781.2
(-0.9)
P 		5145.1
(-2)
P 		3314
C 4593.1
(-3)
P 		4920.6
(-2.2)
P 		6912
(3)
P 		5468
(-0.7)
P 		6205
(1.2)
P 		6800
(2.7)
P 		2319
avr 5593.9
(-1.2) 		5220.2
(-3) 		6242.5
(1.9) 		6475.5
(3) 		6206.5
(1.7) 		6115.3
(1.3) 		1255
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1477
1 2 3 4 range
A 1936.9
(3)
P 		977.8
(-1.6)
P 		1469.7
(0.7)
P 		697.2
(-3)
P 		1240
B 2173.8
(3)
P 		1643.3
(-0.6)
P 		1564.6
(-1.1)
P 		1288.3
(-3)
P 		886
C 2167.9
(3)
P 		1589
(0.4)
P 		1906.7
(1.8)
P 		848.4
(-3)
P 		1320
avr 2092.9
(3) 		1403.4
(-0.6) 		1647
(0.7) 		944.6
(-3) 		1148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1249
1 2 3 4 5 6 range
A 1288.2
(-3)
P 		2178.1
(3)
P 		1428.8
(-2.1)
P 		1529.1
(-1.4)
P 		2001.7
(1.8)
P 		1558.4
(-1.2)
P 		890
B 1809.5
(-0)
P 		1536.4
(-1.5)
P 		1276
(-3)
P 		2100.3
(1.6)
P 		2348.8
(3)
P 		1918.6
(0.6)
P 		1073
C 1702.4
(0.1)
P 		1501.4
(-1)
P 		1759.2
(0.4)
P 		1099.6
(-3)
P 		2007.8
(1.6)
P 		2276.4
(3)
P 		1177
avr 1600
(-1.9) 		1738.6
(-0.6) 		1488
(-3) 		1576.3
(-2.2) 		2119.4
(3) 		1917.8
(1.1) 		631
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173797_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24454
Sequence Type Exemplar sequence
Representative Public ID CEK031C5R NCBI
Target Description CEK031C5R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK829.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33457 /WB_GENE_ID=ZK829.7 /WP=CE18467 /CHR=4 /FEA=Genomic Cluster /DEF=alcohl dehydrogenase like; C.elegans cDNA clone yk31c5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069868(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069868 NCBI Caenorhabditis elegans ZK829.7 (ZK829.7) mRNA, complete cds. 11/11 None
ZK829.7 ENSEMBL cdna:known chromosome:CEL140:IV:11959869:11961505:-1 gene:ZK829.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11959896-11961509(-) 100.0 100.0
Public Domain and Genome References
Gene Title alcohl dehydrogenase like
Ensembl ZK829.7
Entrez Gene 178132 Entrez gene
SwissProt Q23624 EMBL-EBI
WormBase CE18467 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1638498_S_AT dm
DROSGENOME1:152715_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4024 alcohol dehydrogenase activity, zinc-dependent inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98080 Hypothetical protein ZK829.7 [Caenorhabditis elegans] ref|NP_502269.1| ZK829.7 [Caenorhabditis elegans] 0.0
blast CAE62155 Hypothetical protein CBG06201 [Caenorhabditis briggsae] 0.0
blast AAY63990 putative zinc-dependent alcohol dehydrogenase [Lysiphlebus testaceipes] 1.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 2.0E-51
Sequence
Target Sequence 
>C. ELEGANS:173797_AT
gccacttccgaataattgctcaataagcctccaaaggtgtaataattgtatttcccattt
tgccatttcatacattgtcccgactcccttcactcataattatatagtcagaaagtctta
tttcatcctgtgcatttactctattacttcccagacatcggtattttgagtatagtgttg
ccatctgcttttcaaaaattccctgtaacataaaatccacattttctcccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACTTCCGAATAATTGCTCAATA 337 279 1118 Antisense
TTGTATTTCCCATTTTGCCATTTCA 380 705 1163 Antisense
TTGCCATTTCATACATTGTCCCGAC 649 701 1177 Antisense
GACTCCCTTCACTCATAATTATATA 97 375 1199 Antisense
AAGTCTTATTTCATCCTGTGCATTT 52 159 1230 Antisense
TGTGCATTTACTCTATTACTTCCCA 373 555 1246 Antisense
ACTCTATTACTTCCCAGACATCGGT 65 99 1255 Antisense
ACTTCCCAGACATCGGTATTTTGAG 457 103 1263 Antisense
TTGAGTATAGTGTTGCCATCTGCTT 15 707 1283 Antisense
AGTGTTGCCATCTGCTTTTCAAAAA 620 59 1291 Antisense
CATAAAATCCACATTTTCTCCCGTT 621 213 1326 Antisense
Sequence Source Affymetrix Proprietary Database