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[173796_at] Giant secretory protein I-C

Description CEC5972 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0303.14 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C09597 /WB_GENE_ID=B0303.14 /WP=CE00003 /CHR=3 /FEA=Genomic Cluster /DEF=Giant secretory protein I-C; C.elegans cDNA clone yk173c6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 29      4grp_high_8_8 > 15      6grp_highest_nonorm > 90      6grp_total > 56      4grp_total > 0      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 131.3
(-3)
P 		159.4
(-1.6)
P 		221.4
(1.6)
P 		248.6
(3)
P 		117
B 205
(3)
P 		150.8
(-3)
P 		156.9
(-2.3)
P 		198.6
(2.3)
P 		54
C 196
(1.6)
P 		150
(-3)
P 		210.3
(3)
P 		194.2
(1.4)
P 		60
avr 177.4
(-0.6) 		153.4
(-3) 		196.2
(1.3) 		213.8
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 211.5
(0.3)
P 		181.9
(-0.8)
P 		287.6
(3)
P 		120.9
(-3)
P 		153.3
(-1.8)
P 		228.6
(0.9)
P 		167
B 153
(-1.5)
P 		184.8
(-0.4)
P 		111.2
(-3)
P 		144.7
(-1.8)
P 		150.3
(-1.6)
P 		278.5
(3)
P 		167
C 147
(-1.3)
P 		197.2
(3)
P 		127.8
(-3)
P 		194.1
(2.7)
P 		149.8
(-1.1)
P 		141.7
(-1.8)
P 		69
avr 170.5
(-1.2) 		188
(0.4) 		175.5
(-0.8) 		153.2
(-2.8) 		151.1
(-3) 		216.3
(3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 47.8
(0.4)
P 		34.6
(-3)
P 		57.9
(3)
P 		36.4
(-2.5)
P 		23
B 65.4
(3)
P 		37.3
(-2.8)
P 		36.4
(-3)
P 		42.3
(-1.8)
P 		29
C 64.9
(1.8)
P 		43.1
(-1.5)
P 		73.3
(3)
P 		32.7
(-3)
P 		41
avr 59.4
(3) 		38.3
(-2.7) 		55.9
(2.1) 		37.1
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 39
(-1.5)
P 		64.7
(3)
P 		62.6
(2.6)
P 		30.7
(-3)
P 		46.3
(-0.2)
P 		55.6
(1.4)
P 		34
B 53.2
(-1)
P 		61.5
(-0.3)
P 		27
(-3)
P 		38.3
(-2.1)
P 		61.1
(-0.3)
P 		103.8
(3)
P 		77
C 54.5
(1.8)
P 		60.2
(3)
P 		32.5
(-3)
P 		39
(-1.6)
P 		48.5
(0.5)
P 		47.4
(0.2)
P 		28
avr 48.9
(-0.6) 		62.1
(1.8) 		40.7
(-2.1) 		36
(-3) 		52
(-0.1) 		68.9
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173796_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24398
Sequence Type Exemplar sequence
Representative Public ID CEC5972 NCBI
Target Description CEC5972 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0303.14 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C09597 /WB_GENE_ID=B0303.14 /WP=CE00003 /CHR=3 /FEA=Genomic Cluster /DEF=Giant secretory protein I-C; C.elegans cDNA clone yk173c6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066521 NCBI Caenorhabditis elegans B0303.14 (B0303.14) mRNA, complete cds. 11/11 None
B0303.14 ENSEMBL cdna:known chromosome:CEL140:III:8713891:8716086:-1 gene:B0303.14 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8713967-8716054(-) 100.0 100.0
Public Domain and Genome References
Gene Title Giant secretory protein I-C
Ensembl B0303.14
Entrez Gene 176223 Entrez gene
SwissProt P34263 EMBL-EBI
WormBase CE00003 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27904 Hypothetical protein B0303.14 [Caenorhabditis elegans] ref|NP_498922.1| B0303.14 [Caenorhabditis elegans] sp|P34263|YKAD_CAEEL Hypothetical protein B0303.14 in chromosome III 0.0
blast CAE69288 Hypothetical protein CBG15343 [Caenorhabditis briggsae] 2.0E-98
blast CAE64390 Hypothetical protein CBG09080 [Caenorhabditis briggsae] 3.0E-94
Sequence
Target Sequence 
>C. ELEGANS:173796_AT
ggaacttctaattagtttatgctttaatcgatgttttgtgtttctttaaattttgaattt
ttggtataattcatatcttctatcttttgttcttctaagttcttttaaaatttgatctat
agaatctatatacacattcttcatttcttacctatctactctaataacctaaccctttaa
ctgacgtcccttttgttcaatatacttttgatttttgacctgcacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTTCTAATTAGTTTATGCTTT 452 529 1223 Antisense
TAATCGATGTTTTGTGTTTCTTTAA 691 635 1247 Antisense
GGTATAATTCATATCTTCTATCTTT 602 505 1285 Antisense
ATATCTTCTATCTTTTGTTCTTCTA 178 21 1295 Antisense
TATCTTTTGTTCTTCTAAGTTCTTT 581 659 1303 Antisense
TATACACATTCTTCATTTCTTACCT 418 661 1351 Antisense
TTCATTTCTTACCTATCTACTCTAA 213 689 1362 Antisense
TATCTACTCTAATAACCTAACCCTT 694 633 1375 Antisense
TTAACTGACGTCCCTTTTGTTCAAT 81 679 1399 Antisense
GACGTCCCTTTTGTTCAATATACTT 235 375 1405 Antisense
TACTTTTGATTTTTGACCTGCACTA 167 645 1425 Antisense
Sequence Source Affymetrix Proprietary Database