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[173792_s_at] serine/threonine kinase

Description CEK039EZF /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C28A5.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D36989 /WB_GENE_ID=C28A5.6 /WP=CE00673 /CHR=3 /FEA=Genomic Cluster /DEF=serine-threonine kinase; C.elegans cDNA clone yk39e12 : 5prime end, single read.
Cluster 6grp_total > 85      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 27.8
(-3)
A 		38.7
(-1.1)
A 		42.9
(-0.4)
A 		62.4
(3)
P 		35
B 45.2
(3)
A 		40.9
(2.4)
A 		22.1
(-0.4)
A 		4.6
(-3)
A 		41
C 39
(-1.7)
A 		17.3
(-3)
A 		34
(-2)
A 		114.2
(3)
P 		97
avr 37.3
(-1.9) 		32.3
(-3) 		33
(-2.9) 		60.4
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 15.8
(-1.8)
A 		5.9
(-3)
A 		16.1
(-1.8)
A 		45.8
(1.8)
A 		54
(2.8)
P 		55.7
(3)
P 		50
B 4.5
(-3)
A 		25.7
(-0.5)
A 		4.9
(-3)
A 		48.5
(2.1)
A 		55.9
(3)
P 		46.3
(1.9)
P 		51
C 29.3
(-2.2)
A 		34
(-1.5)
A 		63.4
(3)
A 		29.6
(-2.2)
A 		24.4
(-3)
A 		61.7
(2.7)
P 		39
avr 16.5
(-3) 		21.9
(-2.1) 		28.1
(-1.2) 		41.3
(0.9) 		44.8
(1.5) 		54.6
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.1
(0.6)
A 		8.4
(-3)
A 		11.2
(3)
A 		9.1
(-1.5)
P 		3
B 14.4
(3)
A 		10.1
(1.1)
A 		5.1
(-1.2)
A 		1
(-3)
A 		13
C 12.9
(0.3)
A 		5
(-3)
A 		11.8
(-0.1)
A 		19.3
(3)
P 		14
avr 12.5
(3) 		7.8
(-3) 		9.4
(-1) 		9.8
(-0.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.9
(-2.7)
A 		2.1
(-3)
A 		3.5
(-2.4)
A 		11.6
(1)
A 		16.3
(3)
P 		13.6
(1.9)
P 		14
B 1.6
(-2.9)
A 		8.6
(-0.9)
A 		1.2
(-3)
A 		12.9
(0.3)
A 		22.7
(3)
P 		17.3
(1.5)
P 		22
C 10.9
(-1)
A 		10.4
(-1.2)
A 		16.1
(1.1)
A 		5.9
(-3)
A 		7.9
(-2.2)
A 		20.7
(3)
P 		15
avr 5.1
(-3) 		7
(-2.1) 		6.9
(-2.1) 		10.1
(-0.5) 		15.6
(2.2) 		17.2
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173792_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24365
Sequence Type Exemplar sequence
Representative Public ID CEK039EZF NCBI
Target Description CEK039EZF /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C28A5.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D36989 /WB_GENE_ID=C28A5.6 /WP=CE00673 /CHR=3 /FEA=Genomic Cluster /DEF=serine-threonine kinase; C.elegans cDNA clone yk39e12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065499(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065499 NCBI Caenorhabditis elegans C28A5.6 (C28A5.6) mRNA, complete cds. 11/11 A 
C28A5.6 ENSEMBL cdna:known chromosome:CEL140:III:4423748:4429468:-1 gene:C28A5.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4423764-4429469(-) 97.08 100.0
Public Domain and Genome References
Gene Title serine/threonine kinase
Ensembl C28A5.6
Entrez Gene 175579 Entrez gene
SwissProt Q18274 EMBL-EBI
WormBase CE00673 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA83631 Hypothetical protein C28A5.6 [Caenorhabditis elegans] emb|CAA83602.1| Hypothetical protein C28A5.6 [Caenorhabditis elegans] ref|NP_497900.1| C28A5.6 [Caenorhabditis elegans] 0.0
blast AAB70668 Hypothetical protein K09C6.1 [Caenorhabditis elegans] ref|NP_503345.2| K09C6.1 [Caenorhabditis elegans] 0.0
blast CAE71202 Hypothetical protein CBG18064 [Caenorhabditis briggsae] 1.0E-145
Sequence
Target Sequence 
>C. ELEGANS:173792_S_AT
aactccttccgatgttgtcaagaataaaaaaggtcgagcgaaaggtgatccggagaaaca
gaagcaggatagaaaggagaacaaaactgaagaagagaagaggaaattatctgaaccacc
gaagccgaagccgggaagaggaaaaaaggtcagccgcggactgatcacccgcgagttttt
gttgggaatgagacatgattttactggtacacagtcggcaatgacaggctcatatgattc
tacgtctgccacatcgttatccacgtggacttcgtctacgtgtgcaactgatgaaggaga
agagaagaggaagttcaaatggagtctgaagtctgaagaggattctgaagttgagttttt
cgaagacttggatcaagaggaaagagaacattttagaaactatgagaatctagttgctct
ttctgttaaagatgaagtggccctctcgtctggatctgaagtcgaaccactctctgatat
tgattctgaggagaatctggcaattattaaaagacttgagaaacgagagatggaaatcgg
ttgggaagtgtcaagtgagcgggagaagacaaccggcgatagaagcccagatgatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCCTTCCGATGTTGTCAAGAAT 95 143 2569 Antisense
AATTATCTGAACCACCGAAGCCGAA 202 173 2673 Antisense
GATCACCCGCGAGTTTTTGTTGGGA 703 419 2731 Antisense
TGAGACATGATTTTACTGGTACACA 365 569 2757 Antisense
TGGTACACAGTCGGCAATGACAGGC 39 553 2773 Antisense
TATGATTCTACGTCTGCCACATCGT 47 657 2801 Antisense
AAATGGAGTCTGAAGTCTGAAGAGG 628 119 2885 Antisense
TCTGTTAAAGATGAAGTGGCCCTCT 54 293 2990 Antisense
ATCGGTTGGGAAGTGTCAAGTGAGC 500 33 3104 Antisense
GACAACCGGCGATAGAAGCCCAGAT 23 359 3136 Antisense
CCGGCGATAGAAGCCCAGATGATCA 419 263 3141 Antisense
Sequence Source Affymetrix Proprietary Database