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[173791_at]

Description AV194568 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y102A5C.18 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV194568 /WB_GENE_ID=Y102A5C.18 /WP=CE20390 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk631a7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 92      6grp_total > 59      4grp_total > 55      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 312.8
(3)
P 		258.6
(0.5)
P 		235.4
(-0.6)
P 		184.4
(-3)
P 		128
B 238.2
(3)
P 		167.4
(-3)
P 		224.9
(1.9)
P 		206.7
(0.3)
P 		71
C 347.8
(3)
P 		214.2
(-3)
P 		236.7
(-2)
P 		216.8
(-2.9)
P 		134
avr 299.6
(3) 		213.4
(-2.3) 		232.3
(-1.2) 		202.6
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 463
1 2 3 4 5 6 range
A 339.4
(0.7)
P 		221.2
(-2.4)
P 		196.4
(-3)
P 		244.3
(-1.8)
P 		398
(2.2)
P 		427.7
(3)
P 		231
B 389.2
(0.3)
P 		261.3
(-1.4)
P 		137
(-3)
P 		314
(-0.7)
P 		443.9
(1)
P 		599.9
(3)
P 		463
C 336.3
(-1.8)
P 		277.3
(-2.9)
P 		270.5
(-3)
P 		355.5
(-1.4)
P 		316
(-2.1)
P 		591.5
(3)
P 		321
avr 355
(-0.3) 		253.3
(-2.1) 		201.3
(-3) 		304.6
(-1.2) 		386
(0.3) 		539.7
(3) 		338
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 113.9
(3)
P 		56.1
(-1)
P 		61.5
(-0.6)
P 		27
(-3)
P 		87
B 76
(3)
P 		41.3
(-3)
P 		52.1
(-1.1)
P 		44.1
(-2.5)
P 		35
C 115.1
(3)
P 		61.6
(-1.1)
P 		82.5
(0.5)
P 		36.6
(-3)
P 		79
avr 101.7
(3) 		53
(-1.4) 		65.4
(-0.3) 		35.9
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 62.6
(-1.5)
P 		78.7
(-0.2)
P 		42.8
(-3)
P 		62
(-1.5)
P 		120.1
(3)
P 		104.1
(1.8)
P 		77
B 135.4
(0.2)
P 		87
(-1.3)
P 		33.3
(-3)
P 		83.2
(-1.4)
P 		180.4
(1.6)
P 		223.7
(3)
P 		190
C 124.7
(-0.4)
P 		84.6
(-2.3)
P 		68.9
(-3)
P 		71.5
(-2.9)
P 		102.2
(-1.5)
P 		198
(3)
P 		129
avr 107.6
(-0.2) 		83.4
(-1.3) 		48.3
(-3) 		72.2
(-1.9) 		134.2
(1.1) 		175.3
(3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173791_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25438
Sequence Type Exemplar sequence
Representative Public ID AV194568 NCBI
Target Description AV194568 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y102A5C.18 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV194568 /WB_GENE_ID=Y102A5C.18 /WP=CE20390 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk631a7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074888(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074888 NCBI Caenorhabditis elegans E2F-like (mammalian transcription factor) family member (efl-1) (efl-1) mRNA, complete cds. 11/11 A 
GENEFINDER00000003193 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16961347:16968251:-1 9/11 None
Y102A5C.18.2 ENSEMBL cdna:known chromosome:CEL140:V:16961157:16968253:-1 gene:Y102A5C.18 11/11 None
Y102A5C.18.1 ENSEMBL cdna:known chromosome:CEL140:V:16961231:16968259:-1 gene:Y102A5C.18 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16961241-16968252(-) 97.57 100.0
Public Domain and Genome References
Gene Title
Gene Symbol efl-1
Ensembl Y102A5C.18
Entrez Gene 180133 Entrez gene
SwissProt Q9XX87 EMBL-EBI
WormBase CE20390 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
74 regulation of progression through cell cycle inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5667 transcription factor complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20948 Hypothetical protein Y102A5C.18 [Caenorhabditis elegans] ref|NP_507289.1| E2F-like (mammalian transcription factor) family member (efl-1) [Caenorhabditis elegans] gb|AAK19022.1| EFL-1 [Caenorhabditis elegans] 0.0
blast CAE71632 Hypothetical protein CBG18599 [Caenorhabditis briggsae] 1.0E-117
blast CAE71632 Hypothetical protein CBG18599 [Caenorhabditis briggsae] 1.0E-116
blast XP_799123 PREDICTED: similar to Transcription factor E2F5 (E2F-5) [Strongylocentrotus purpuratus] 7.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR003316 EMBL-EBI Transcription factor E2F/dimerisation partner (TDP) 2.2E-29
Sequence
Target Sequence 
>C. ELEGANS:173791_AT
aatttcgaattctgcgaccatttctcattttacatctattcatttactccaaattccaaa
tttttccccaaaaaaattatcgatgtttcggctccaaatgttattattttcccatccaca
gtgcccacacaattcataatgtgcctctggagaaaacctaacgtatttcaatttctatcc
caa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTCGAATTCTGCGACCATTTCT 307 175 1065 Antisense
TCTGCGACCATTTCTCATTTTACAT 374 609 1075 Antisense
TTTACATCTATTCATTTACTCCAAA 474 673 1093 Antisense
ATTCATTTACTCCAAATTCCAAATT 245 11 1102 Antisense
AAAATTATCGATGTTTCGGCTCCAA 652 131 1137 Antisense
TGTTTCGGCTCCAAATGTTATTATT 53 561 1148 Antisense
TGTTATTATTTTCCCATCCACAGTG 631 561 1163 Antisense
ATCCACAGTGCCCACACAATTCATA 301 41 1178 Antisense
ACAATTCATAATGTGCCTCTGGAGA 351 115 1193 Antisense
GTGCCTCTGGAGAAAACCTAACGTA 611 477 1205 Antisense
TAACGTATTTCAATTTCTATCCCAA 408 639 1223 Antisense
Sequence Source Affymetrix Proprietary Database