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[173788_at]

Description AV196647 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y54E10A.16 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196647 /WB_GENE_ID=Y54E10A.16 /WP=CE24445 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk656g1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 66      6grp_total > 60      4grp_total > 14      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1307
1 2 3 4 range
A 2086.2
(3)
P 		1345.4
(-3)
P 		1501.3
(-1.7)
P 		1777.5
(0.5)
P 		741
B 1418
(-1.9)
P 		1711.6
(-0.5)
P 		1169.8
(-3)
P 		2477.1
(3)
P 		1307
C 1990.3
(3)
P 		1345.4
(-3)
P 		1640.9
(-0.3)
P 		1872.8
(1.9)
P 		645
avr 1831.5
(0.9) 		1467.5
(-2.7) 		1437.3
(-3) 		2042.5
(3) 		605

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 851
1 2 3 4 5 6 range
A 1263.1
(-0.4)
P 		1372.4
(3)
P 		1180.1
(-3)
P 		1297.7
(0.7)
P 		1329.2
(1.7)
P 		1368.3
(2.9)
P 		192
B 1585.3
(0.1)
P 		1368.9
(-1.6)
P 		1568.4
(-0)
P 		1955.4
(3)
P 		1324.7
(-1.9)
P 		1185.3
(-3)
P 		770
C 1537.4
(-0.5)
P 		1256.6
(-2.5)
P 		1487.5
(-0.9)
P 		2031.2
(3)
P 		1422.6
(-1.3)
P 		1187.2
(-3)
P 		844
avr 1461.9
(-0.5) 		1332.6
(-2) 		1412
(-1.1) 		1761.4
(3) 		1358.8
(-1.7) 		1246.9
(-3) 		515
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 499
1 2 3 4 range
A 759.6
(3)
P 		292
(-2.6)
P 		392.5
(-1.4)
P 		260.2
(-3)
P 		499
B 452.2
(1.2)
P 		422.7
(0.5)
P 		271.1
(-3)
P 		527.9
(3)
P 		257
C 658.8
(3)
P 		386.8
(-1.8)
P 		571.9
(1.5)
P 		315.8
(-3)
P 		343
avr 623.5
(3) 		367.2
(-3) 		411.8
(-2) 		368
(-3) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 232.9
(-3)
P 		488.1
(3)
P 		257
(-2.4)
P 		329.1
(-0.7)
P 		401.1
(1)
P 		333.1
(-0.6)
P 		255
B 551.6
(3)
P 		455.6
(-0.4)
P 		380.9
(-3)
P 		517.9
(1.8)
P 		538.2
(2.5)
P 		442
(-0.9)
P 		171
C 569.9
(3)
P 		383.4
(-2.8)
P 		378.6
(-3)
P 		408.5
(-2.1)
P 		460.3
(-0.4)
P 		397.4
(-2.4)
P 		191
avr 451.5
(2.3) 		442.4
(1.9) 		338.8
(-3) 		418.5
(0.7) 		466.5
(3) 		390.8
(-0.6) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173788_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22555
Sequence Type Exemplar sequence
Representative Public ID AV196647 NCBI
Target Description AV196647 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y54E10A.16 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196647 /WB_GENE_ID=Y54E10A.16 /WP=CE24445 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk656g1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058728(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058728 NCBI Caenorhabditis elegans Y54E10A.16a (Y54E10A.16) mRNA, complete cds. 9/11 None
Y54E10A.16a.4 ENSEMBL cdna:known chromosome:CEL140:I:3243895:3246074:-1 gene:Y54E10A.16 9/11 None
Y54E10A.16a.3 ENSEMBL cdna:known chromosome:CEL140:I:3244160:3246328:-1 gene:Y54E10A.16 11/11 None
Y54E10A.16a.2 ENSEMBL cdna:known chromosome:CEL140:I:3244160:3246076:-1 gene:Y54E10A.16 11/11 A 
Y54E10A.16a.1 ENSEMBL cdna:known chromosome:CEL140:I:3244160:3246074:-1 gene:Y54E10A.16 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171898 2 1 NM_058728 173788_at (9), 187201_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3244178-3246063(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y54E10A.16
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60770 Hypothetical protein Y54E10A.16a [Caenorhabditis elegans] ref|NP_491129.1| Y54E10A.16a [Caenorhabditis elegans] 0.0
blast CAE68994 Hypothetical protein CBG14981 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173788_AT
gaaacaaaattgcctttctctcgtttagtcttgaatctagtcgtggatcccgtttacctc
agaatctttttttccatagctaccacttttttgccgcttgcctcttcatcttattcttgt
ttttgtcgtctctcatgtcaacaaaatctcaaaaggtgccccccgtcccaaaagaaactg
tgattttctcatgcaatatagccgtgtttcgcctttcccacccaaaatgtgaatataaat
cccgagagctcgatcttcttctttccttccagaacccccgtatatcccgtatatttctgt
gttaaattgtgattcgaaactgttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACAAAATTGCCTTTCTCTCGTT 706 355 1336 Antisense
CCTTTCTCTCGTTTAGTCTTGAATC 679 267 1348 Antisense
GAATCTAGTCGTGGATCCCGTTTAC 506 327 1368 Antisense
ACCTCAGAATCTTTTTTTCCATAGC 58 89 1391 Antisense
TTCCATAGCTACCACTTTTTTGCCG 472 699 1407 Antisense
CCTCTTCATCTTATTCTTGTTTTTG 661 267 1436 Antisense
TGCAATATAGCCGTGTTTCGCCTTT 5 577 1527 Antisense
CGCCTTTCCCACCCAAAATGTGAAT 615 257 1545 Antisense
AATCCCGAGAGCTCGATCTTCTTCT 95 169 1573 Antisense
CCCCGTATATCCCGTATATTTCTGT 626 261 1611 Antisense
TAAATTGTGATTCGAAACTGTTCTT 291 641 1638 Antisense
Sequence Source Affymetrix Proprietary Database