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[173787_at]

Description AV200038_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y47G7B.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV200038 /WB_GENE_ID=Y47G7B.2 /WP=CE19624 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk555g12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 86      6grp_total > 87      4grp_total > 12      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 13.1
(-2.3)
M 		20.2
(-1.2)
A 		8.3
(-3)
A 		47.3
(3)
P 		39
B 39.9
(-0.6)
P 		31.4
(-1.6)
P 		20.1
(-3)
A 		70
(3)
P 		50
C 35.5
(-0.1)
P 		15.5
(-2.2)
A 		8.6
(-3)
A 		63.4
(3)
P 		55
avr 29.5
(-0.8) 		22.4
(-1.7) 		12.3
(-3) 		60.2
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 31.3
(-3)
P 		33.8
(-2.7)
P 		67.5
(1.4)
P 		33.8
(-2.7)
P 		80.3
(3)
P 		56
(0)
P 		49
B 30.9
(-2.5)
P 		67.3
(-0.5)
P 		22.1
(-3)
A 		71.4
(-0.3)
P 		57
(-1.1)
P 		131.2
(3)
P 		109
C 46.2
(-3)
P 		51.3
(-2.6)
P 		55.3
(-2.3)
P 		65.7
(-1.5)
A 		59.9
(-1.9)
P 		124.3
(3)
P 		78
avr 36.1
(-3) 		50.8
(-1.7) 		48.3
(-1.9) 		57
(-1.1) 		65.7
(-0.4) 		103.8
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.8
(0.3)
M 		4.4
(-0.2)
A 		2.2
(-3)
A 		6.9
(3)
P 		5
B 12.7
(1.7)
P 		7.8
(-1.2)
P 		4.7
(-3)
A 		14.9
(3)
P 		10
C 11.7
(3)
P 		4.4
(-2)
A 		3
(-3)
A 		10.7
(2.3)
P 		9
avr 9.7
(2.1) 		5.5
(-1.2) 		3.3
(-3) 		10.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 5.8
(-3)
P 		12
(-1)
P 		14.7
(-0.1)
P 		8.6
(-2.1)
P 		24.2
(3)
P 		13.6
(-0.5)
P 		18
B 10.8
(-2.3)
P 		22.4
(-0.7)
P 		5.4
(-3)
A 		18.9
(-1.1)
P 		23.2
(-0.5)
P 		48.9
(3)
P 		44
C 17.1
(-2.2)
P 		15.7
(-2.5)
P 		14.1
(-2.8)
P 		13.2
(-3)
A 		19.4
(-1.7)
P 		41.6
(3)
P 		28
avr 11.2
(-3) 		16.7
(-1.6) 		11.4
(-2.9) 		13.6
(-2.4) 		22.3
(-0.2) 		34.7
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173787_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23701
Sequence Type Exemplar sequence
Representative Public ID AV200038 NCBI
Target Description AV200038_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y47G7B.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV200038 /WB_GENE_ID=Y47G7B.2 /WP=CE19624 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk555g12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061938 NCBI Caenorhabditis elegans Y47G7B.2 (Y47G7B.2) mRNA, complete cds. 11/11 None
Y47G7B.2 ENSEMBL cdna:known chromosome:CEL140:II:2705996:2707982:-1 gene:Y47G7B.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2706005-2707938(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47G7B.2
Entrez Gene 173614 Entrez gene
SwissProt Q9TZD6 EMBL-EBI
WormBase CE19624 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68731 Hypothetical protein Y47G7B.2 [Caenorhabditis elegans] ref|NP_494339.1| Y47G7B.2 [Caenorhabditis elegans] 0.0
blast CAE59752 Hypothetical protein CBG03198 [Caenorhabditis briggsae] 1.0E-58
blast AAK84577 Hypothetical protein T24E12.5 [Caenorhabditis elegans] ref|NP_494641.2| T24E12.5 [Caenorhabditis elegans] 8.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494339.1 1 64-86
Y47G7B.2 1 64-86
Sequence
Target Sequence 
>C. ELEGANS:173787_AT
tttttcgggaattagcttgttcttgattctcaaaagcttaaaattttttcctatgagatt
cttattcccaccccaattcgtaaattttcctagattctcattcacattcttgcatacttt
ttcctcaaaattataaatctcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTCGGGAATTAGCTTGTTCTTG 655 673 1268 Antisense
GGAATTAGCTTGTTCTTGATTCTCA 507 533 1275 Antisense
GCTTGTTCTTGATTCTCAAAAGCTT 489 305 1282 Antisense
AGCTTAAAATTTTTTCCTATGAGAT 98 77 1302 Antisense
TCCTATGAGATTCTTATTCCCACCC 443 591 1316 Antisense
CAATTCGTAAATTTTCCTAGATTCT 22 177 1341 Antisense
AAATTTTCCTAGATTCTCATTCACA 92 117 1349 Antisense
GATTCTCATTCACATTCTTGCATAC 667 431 1360 Antisense
TTCACATTCTTGCATACTTTTTCCT 431 687 1368 Antisense
ATTCTTGCATACTTTTTCCTCAAAA 550 11 1373 Antisense
TTTCCTCAAAATTATAAATCTCACT 400 669 1387 Antisense
Sequence Source Affymetrix Proprietary Database