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[173786_s_at]

Description CEK058C1R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y37E11AR.C /5_PRIME_EXT_DB=WormBase Gene ID /GB=D65500 /WB_GENE_ID=Y37E11AR.C /WP=CE21545 /CHR=4 /FEA=Genomic Cluster /DEF=(ST.LOUIS); C.elegans cDNA clone yk58c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 08      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 90      6grp_total > 04      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 504
1 2 3 4 range
A 154.6
(-2.5)
P 		115.9
(-3)
P 		133.7
(-2.8)
P 		569.7
(3)
P 		454
B 152.7
(-1.9)
P 		110.4
(-3)
P 		125.5
(-2.6)
P 		347
(3)
P 		237
C 163.6
(-1.2)
P 		149.7
(-1.4)
P 		65.6
(-3)
P 		387.7
(3)
P 		322
avr 157
(-2.1) 		125.3
(-2.7) 		108.3
(-3) 		434.8
(3) 		327

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 123.2
(-0.3)
P 		168
(2.3)
P 		181
(3)
P 		93.5
(-2)
P 		149.3
(1.2)
P 		76.1
(-3)
P 		105
B 195.8
(2.9)
P 		114.8
(-0.9)
P 		127.4
(-0.3)
P 		197.1
(3)
P 		172.7
(1.8)
P 		70.6
(-3)
P 		127
C 233.1
(3)
P 		175.8
(-0.3)
P 		131.9
(-2.8)
P 		170.7
(-0.6)
P 		127.7
(-3)
P 		144.2
(-2.1)
P 		105
avr 184
(3) 		152.9
(0.9) 		146.8
(0.4) 		153.8
(0.9) 		149.9
(0.6) 		97
(-3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 56.3
(0.2)
P 		25.2
(-3)
P 		35
(-2)
P 		83.4
(3)
P 		58
B 48.7
(-0.3)
P 		27.3
(-3)
P 		29.1
(-2.8)
P 		74
(3)
P 		47
C 54.2
(1.4)
P 		43
(-0.2)
P 		22.9
(-3)
P 		65.4
(3)
P 		43
avr 53.1
(0.2) 		31.8
(-2.6) 		29
(-3) 		74.3
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 22.7
(-2.4)
P 		59.8
(3)
P 		39.4
(0)
P 		23.7
(-2.2)
P 		45
(0.8)
P 		18.5
(-3)
P 		41
B 68.1
(2.7)
P 		38.2
(-1.4)
P 		30.9
(-2.4)
P 		52.2
(0.5)
P 		70.2
(3)
P 		26.3
(-3)
P 		44
C 86.4
(3)
P 		53.6
(-0.7)
P 		33.6
(-3)
P 		34.3
(-2.9)
P 		41.3
(-2.1)
P 		48.3
(-1.3)
P 		53
avr 59.1
(3) 		50.5
(1.2) 		34.6
(-2.2) 		36.7
(-1.8) 		52.2
(1.5) 		31
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173786_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25065
Sequence Type Exemplar sequence
Representative Public ID CEK058C1R NCBI
Target Description CEK058C1R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y37E11AR.C /5_PRIME_EXT_DB=WormBase Gene ID /GB=D65500 /WB_GENE_ID=Y37E11AR.C /WP=CE21545 /CHR=4 /FEA=Genomic Cluster /DEF=(ST.LOUIS); C.elegans cDNA clone yk58c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068007(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068007 NCBI Caenorhabditis elegans Y37E11AR.4 (Y37E11AR.4) mRNA, complete cds. 11/11 None
SNAP00000021666 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3739599:3740866:-1 11/11 None
GENEFINDER00000021678 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3739599:3740866:-1 11/11 None
Y37E11AR.4 ENSEMBL cdna:known chromosome:CEL140:IV:3739529:3740866:-1 gene:Y37E11AR.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3739605-3740873(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11AR.4
Entrez Gene 177137 Entrez gene
SwissProt Q965X7 EMBL-EBI
WormBase CE21545 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588935_AT similar to N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D cfa
CANINE_2:CFA.15229.1.A1_AT similar to N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D cfa
CANINE_2:CFAAFFX.7282.1.S1_AT similar to N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D cfa
CANINE_2:CFAAFFX.7282.1.S1_S_AT similar to N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D cfa
CHICKEN:GGA.8588.1.S1_S_AT similar to N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D gga
CHICKEN:GGAAFFX.11923.1.S1_AT similar to N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D gga
HG-U133_PLUS_2:226041_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U133B:226041_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HU35KSUBA:W01715_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HU35KSUBB:RC_N90223_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HU35KSUBC:RC_N40212_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
U133_X3P:HS.210706.0.A1_3P_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
U133_X3P:HS.169117.0.A1_3P_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
U133_X3P:HS.102958.0.A1_3P_X_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
U133_X3P:HS.102958.0.A1_3P_A_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U133_PLUS_2:238722_X_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U133B:238722_X_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U133_PLUS_2:242229_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U133B:242229_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U133_PLUS_2:242635_S_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U133B:242635_S_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U95B:43067_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U95B:58038_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U95C:64613_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U133_PLUS_2:233539_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U133B:233539_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
U133_X3P:HS2.299193.1.S1_3P_X_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
U133_X3P:HS2.299193.1.S1_3P_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
U133_X3P:HS2.269418.1.A1_3P_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
U133_X3P:HS.324271.0.S1_3P_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
U133_X3P:1559598_3P_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U133_PLUS_2:1558748_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U133_PLUS_2:1559598_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U95E:68508_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
HG-U95E:79257_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D hs
MG-U74BV2:164102_AT cDNA sequence AB112350 mm
MOE430B:1437872_AT cDNA sequence AB112350 mm
MOUSE430_2:1437872_AT cDNA sequence AB112350 mm
RAE230B:1395025_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D rn
RAT230_2:1395025_AT N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D rn
Protein Similarities
Method ID Description E-Value
blast AAK68434 Hypothetical protein Y37E11AR.4 [Caenorhabditis elegans] ref|NP_500408.1| Y37E11AR.4 [Caenorhabditis elegans] 0.0
blast AAM97964 Hypothetical protein Y37E11AR.3c [Caenorhabditis elegans] ref|NP_741361.1| Y37E11AR.3c [Caenorhabditis elegans] 0.0
blast AAK68433 Hypothetical protein Y37E11AR.3a [Caenorhabditis elegans] ref|NP_500407.1| Y37E11AR.3a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173786_S_AT
cgatcatttggatgcggacgcggtgaagaggatcacaagcctgaaccctcaaatcaagtg
gttcgtcccgctgggattaaagaaatggatgaagaaccaaggcatcggagccgacggatc
caacaccgtgaccgagctcaactggggagagagctcggaattcgtgaagaacgggaagac
catcacaatctggtgcctccctgctcaacattcgggacaacgtggactttccgatcataa
ccaccggttatggtcaggatgggcggtgatcggcgagaatcggagattctactttcccgg
agatactgggttctgtgacgtcgagtttaagaaaatcggcgagaagcttggacccttcga
cctggcagctattccaattggagcctacgagcccagatggttcatgaaatcacatcatat
caatccagatgaagcagtggaagttcataagctcgtcagggctaggaatagcattggaat
tcattggggcacatatccaatggggacaacagagtactacctggagccacgtgacaagct
caaagagctgatggatgctcgggaggatctgaaggacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATCATTTGGATGCGGACGCGGTG 692 247 454 Antisense
GTGGTTCGTCCCGCTGGGATTAAAG 230 251 511 Antisense
AAGACCATCACAATCTGGTGCCTCC 81 155 629 Antisense
CTCCCTGCTCAACATTCGGGACAAC 159 235 650 Antisense
CATTCGGGACAACGTGGACTTTCCG 372 207 662 Antisense
GGACTTTCCGATCATAACCACCGGT 615 509 677 Antisense
GAATCGGAGATTCTACTTTCCCGGA 125 327 730 Antisense
GATACTGGGTTCTGTGACGTCGAGT 706 421 755 Antisense
GTGGAAGTTCATAAGCTCGTCAGGG 418 491 890 Antisense
GGGGCACATATCCAATGGGGACAAC 121 497 939 Antisense
ATGCTCGGGAGGATCTGAAGGACAC 599 41 1008 Antisense
Sequence Source Affymetrix Proprietary Database