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[173780_at] Zinc finger, C2H2 type

Description C46834 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K04C1.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C46834 /WB_GENE_ID=K04C1.3 /WP=CE06087 /CHR=X /FEA=Genomic Cluster /DEF=Zinc finger, C2H2 type; C.elegans cDNA clone yk426d12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 61      4grp_highest_8_8 > 63      4grp_high_8_8 > 28      6grp_highest_nonorm > 81      6grp_total > 70      4grp_total > 35      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 139.9
(0.4)
P 		171.6
(3)
P 		99.5
(-3)
P 		124.2
(-0.9)
P 		72
B 130.2
(-3)
P 		179.3
(-0.1)
P 		181.2
(0.1)
P 		230.5
(3)
P 		100
C 158.9
(2.9)
P 		160.2
(3)
P 		105.2
(-3)
P 		135.1
(0.3)
P 		55
avr 143
(-0.9) 		170.4
(3) 		128.6
(-3) 		163.3
(2) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 170.1
(-2.6)
P 		269.7
(1.2)
P 		317.7
(3)
P 		212.2
(-1)
P 		196.9
(-1.6)
P 		159.6
(-3)
P 		158
B 388.1
(3)
P 		208.9
(-3)
P 		235
(-2.1)
P 		389.6
(3)
P 		260.2
(-1.3)
P 		214.6
(-2.8)
P 		181
C 126.3
(-3)
P 		264.9
(1.4)
P 		224.4
(0.1)
P 		314.9
(3)
P 		180.7
(-1.3)
P 		304.6
(2.7)
P 		189
avr 228.2
(-2) 		247.8
(-0.7) 		259
(-0) 		305.6
(3) 		212.6
(-3) 		226.3
(-2.1) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 50.9
(3)
P 		37.3
(0.5)
P 		26
(-1.6)
P 		18.2
(-3)
P 		33
B 41.5
(-3)
P 		44.3
(-0.8)
P 		42
(-2.6)
P 		49.1
(3)
P 		8
C 52.6
(3)
P 		46.1
(1.7)
P 		36.7
(-0.2)
P 		22.8
(-3)
P 		30
avr 48.3
(3) 		42.6
(1.1) 		34.9
(-1.4) 		30
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 31.3
(-3)
P 		95.9
(3)
P 		69.2
(0.5)
P 		53.8
(-0.9)
P 		59.4
(-0.4)
P 		38.9
(-2.3)
P 		65
B 135
(3)
P 		69.5
(-2)
P 		57.1
(-3)
P 		103.2
(0.6)
P 		105.7
(0.7)
P 		80
(-1.2)
P 		78
C 46.8
(-3)
P 		80.8
(0.7)
P 		57.1
(-1.9)
P 		63.3
(-1.2)
P 		58.5
(-1.7)
P 		102
(3)
P 		55
avr 71
(-0.2) 		82.1
(3) 		61.1
(-3) 		73.4
(0.5) 		74.5
(0.8) 		73.6
(0.6) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173780_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26045
Sequence Type Exemplar sequence
Representative Public ID C46834 NCBI
Target Description C46834 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K04C1.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C46834 /WB_GENE_ID=K04C1.3 /WP=CE06087 /CHR=X /FEA=Genomic Cluster /DEF=Zinc finger, C2H2 type; C.elegans cDNA clone yk426d12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077973(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077973 NCBI Caenorhabditis elegans K04C1.3 (K04C1.3) mRNA, complete cds. 11/11 None
K04C1.3.2 ENSEMBL cdna:known chromosome:CEL140:X:14241554:14243315:-1 gene:K04C1.3 11/11 None
K04C1.3.1 ENSEMBL cdna:known chromosome:CEL140:X:14241554:14243317:-1 gene:K04C1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14241564-14243314(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Ensembl K04C1.3
Entrez Gene 181533 Entrez gene
SwissProt Q21202 EMBL-EBI
WormBase CE06087 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94210 Hypothetical protein K04C1.3 [Caenorhabditis elegans] ref|NP_510374.1| K04C1.3 [Caenorhabditis elegans] 1.0E-163
blast CAB02664 Hypothetical protein F21G4.5 [Caenorhabditis elegans] ref|NP_509662.1| F21G4.5 [Caenorhabditis elegans] 9.0E-32
blast CAE65289 Hypothetical protein CBG10202 [Caenorhabditis briggsae] 3.0E-16
Sequence
Target Sequence 
>C. ELEGANS:173780_AT
cacattttcaaatcaacacgaagatctcaagtaattgcaatatctgccatactttcgtca
tctcaattttgtgtcttttttcaagtgtctgttaataatttctatgtattttgcaccctg
tgtttcttaatttctcctttcttcttgtactgcagatttgtcttttccaacttaataact
gtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACATTTTCAAATCAACACGAAGAT 590 195 962 Antisense
AACACGAAGATCTCAAGTAATTGCA 19 135 976 Antisense
TGCAATATCTGCCATACTTTCGTCA 280 577 997 Antisense
CCATACTTTCGTCATCTCAATTTTG 615 267 1008 Antisense
CGTCATCTCAATTTTGTGTCTTTTT 302 247 1017 Antisense
AAGTGTCTGTTAATAATTTCTATGT 606 157 1044 Antisense
ATTTCTATGTATTTTGCACCCTGTG 243 17 1059 Antisense
TGCACCCTGTGTTTCTTAATTTCTC 650 577 1073 Antisense
CTCCTTTCTTCTTGTACTGCAGATT 168 235 1095 Antisense
GTACTGCAGATTTGTCTTTTCCAAC 488 459 1108 Antisense
TGTCTTTTCCAACTTAATAACTGTG 10 559 1120 Antisense
Sequence Source Affymetrix Proprietary Database