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[173778_s_at]

Description AU115553_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C01B10.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU115553 /WB_GENE_ID=C01B10.10 /WP=CE26855 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk734a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 62      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 90      6grp_total > 62      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 145.8
(2.2)
P 		156.3
(3)
P 		128.4
(1)
P 		73.2
(-3)
P 		83
B 118.6
(-0.3)
P 		154.2
(3)
P 		117
(-0.4)
P 		88.5
(-3)
P 		66
C 169.2
(2)
P 		143.9
(0.7)
P 		189.5
(3)
P 		71.6
(-3)
P 		118
avr 144.5
(2.4) 		151.5
(3) 		145
(2.5) 		77.8
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 86.1
(-3)
P 		165
(-1.3)
P 		363.6
(3)
P 		233.1
(0.2)
P 		168.3
(-1.2)
P 		137.3
(-1.9)
P 		278
B 98.6
(-3)
P 		150.4
(-1.6)
P 		318.5
(3)
P 		188.9
(-0.5)
P 		249.9
(1.1)
P 		154.8
(-1.5)
P 		220
C 137.4
(-3)
P 		140.7
(-2.8)
P 		180.4
(-1.4)
P 		306.6
(3)
P 		136.4
(-3)
P 		177.7
(-1.5)
P 		170
avr 107.4
(-3) 		152
(-1.5) 		287.5
(3) 		242.9
(1.5) 		184.9
(-0.4) 		156.6
(-1.4) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 53.1
(3)
P 		33.9
(0.3)
P 		33.6
(0.2)
P 		10.7
(-3)
P 		42
B 37.8
(2.9)
P 		38.1
(3)
P 		27.1
(-0.4)
P 		18.8
(-3)
P 		19
C 56
(1.9)
P 		41.4
(0.3)
P 		66
(3)
P 		12.1
(-3)
P 		54
avr 49
(3) 		37.8
(1.1) 		42.2
(1.8) 		13.9
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 15.9
(-3)
P 		58.7
(1.1)
P 		79.2
(3)
P 		59.1
(1.1)
P 		50.8
(0.3)
P 		33.4
(-1.3)
P 		63
B 34.3
(-3)
P 		50.1
(-1.6)
P 		77.3
(0.8)
P 		50
(-1.6)
P 		101.5
(3)
P 		57.7
(-0.9)
P 		67
C 50.9
(-0.4)
P 		42.9
(-3)
P 		45.9
(-2)
P 		61.7
(3)
P 		44.2
(-2.6)
P 		59.5
(2.3)
P 		19
avr 33.7
(-3) 		50.6
(0) 		67.5
(3) 		56.9
(1.1) 		65.5
(2.6) 		50.2
(-0.1) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173778_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25026
Sequence Type Exemplar sequence
Representative Public ID AU115553 NCBI
Target Description AU115553_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C01B10.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU115553 /WB_GENE_ID=C01B10.10 /WP=CE26855 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk734a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068620(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068620 NCBI Caenorhabditis elegans C01B10.10 (C01B10.10) mRNA, complete cds. 11/11 None
SNAP00000026858 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6624548:6627704:-1 9/11 None
GENEFINDER00000026867 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6624447:6627704:-1 9/11 None
C01B10.10 ENSEMBL cdna:known chromosome:CEL140:IV:6624355:6627976:-1 gene:C01B10.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6624361-6627910(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01B10.10
Entrez Gene 177428 Entrez gene
SwissProt Q17542 EMBL-EBI
WormBase CE37180 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47921 Hypothetical protein C01B10.10 [Caenorhabditis elegans] ref|NP_501021.2| C01B10.10 [Caenorhabditis elegans] 0.0
blast AAC47922 Hypothetical protein C01B10.4 [Caenorhabditis elegans] ref|NP_501022.3| C01B10.4 [Caenorhabditis elegans] 0.0
blast CAE61495 Hypothetical protein CBG05392 [Caenorhabditis briggsae] 0.0
blast AAC47922 Hypothetical protein C01B10.4 [Caenorhabditis elegans] ref|NP_501022.3| C01B10.4 [Caenorhabditis elegans] 1.0E-174
blast AAC47922 Hypothetical protein C01B10.4 [Caenorhabditis elegans] ref|NP_501022.3| C01B10.4 [Caenorhabditis elegans] 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 4.9E-90
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 2.5E-86
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501021.2 2 541-563,597-619
C01B10.10 2 541-563,597-619
SNAP00000026858 1 439-461
GENEFINDER00000026867 1 459-481
Sequence
Target Sequence 
>C. ELEGANS:173778_S_AT
atatcccaaacacgcttttcatacagatgatctatattatataatgggaatacatccatt
tgagaaagatgaaaatgaagagcatttggagaaagtttacagaaatatgctcattaattt
tataaagtttggagaacctggaatgggttttgaaatgtctgatctgaatgaatcaacata
tttcgaaatttattggaacgagacaacagggcaaaagccacgaatgagaaaacgatttga
ggaaaagatcacaaactattggctcaaggaaatgatggagtatgatagaaatattacgaa
ggcaaagaagaatcaacgctcgatcaaaccagtttttaaaactgagcaattttatgtgaa
gtcacttgagaaaaacgacggatctcatgaatttattggtattatcatagttttaatcat
tttcttggttggatttatcgctggaagatattgttgtgaaaatggaaccaggaatatgta
cattcgattagatggagataattatgagttaccaaataacttcatcggacatggattgag
tga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCCCAAACACGCTTTTCATACA 422 21 1120 Antisense
AACACGCTTTTCATACAGATGATCT 694 135 1128 Antisense
TGGGTTTTGAAATGTCTGATCTGAA 372 553 1263 Antisense
GGAACGAGACAACAGGGCAAAAGCC 195 531 1314 Antisense
GAAGAATCAACGCTCGATCAAACCA 610 339 1426 Antisense
CAACGCTCGATCAAACCAGTTTTTA 500 185 1433 Antisense
AAACGACGGATCTCATGAATTTATT 182 127 1492 Antisense
ATTTTCTTGGTTGGATTTATCGCTG 254 15 1538 Antisense
GGAACCAGGAATATGTACATTCGAT 203 529 1583 Antisense
TTACCAAATAACTTCATCGGACATG 100 667 1628 Antisense
ACTTCATCGGACATGGATTGAGTGA 302 101 1638 Antisense
Sequence Source Affymetrix Proprietary Database