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[173774_s_at]

Description CEK124G3F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y47G6A.19 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D70799 /WB_GENE_ID=Y47G6A.19 /WP=CE24363 /CHR=1 /FEA=Genomic Cluster /DEF=carboxypeptidase; C.elegans cDNA clone yk124g3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 54      6grp_total > 72      4grp_total > 58      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2620
1 2 3 4 range
A 1492.4
(-1.2)
P 		2724
(1.8)
P 		3234.9
(3)
P 		766.3
(-3)
P 		2469
B 1572.3
(-1.2)
P 		2864.9
(1.8)
P 		3376.9
(3)
P 		786.7
(-3)
P 		2590
C 1668.7
(-0.2)
P 		2478.8
(2.3)
P 		2720.7
(3)
P 		757
(-3)
P 		1964
avr 1577.8
(-0.9) 		2689.2
(1.9) 		3110.8
(3) 		770
(-3) 		2341

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1163
1 2 3 4 5 6 range
A 986.9
(-3)
P 		1718.9
(2.3)
P 		1427
(0.2)
P 		1820.8
(3)
P 		1459.2
(0.4)
P 		1354.4
(-0.4)
P 		834
B 842
(-3)
P 		1410.7
(1.6)
P 		1373.2
(1.3)
P 		1471.2
(2.1)
P 		1584.6
(3)
P 		985.8
(-1.8)
P 		743
C 1062.5
(-2.4)
P 		1334.7
(-0.8)
P 		2004.5
(3)
P 		992
(-2.8)
P 		1804.7
(1.9)
P 		954.4
(-3)
P 		1050
avr 963.8
(-3) 		1488.1
(1.8) 		1601.6
(2.9) 		1428
(1.3) 		1616.2
(3) 		1098.2
(-1.8) 		652
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 836
1 2 3 4 range
A 543.4
(0.5)
P 		591.3
(0.9)
P 		845.7
(3)
P 		112.2
(-3)
P 		734
B 501.4
(0.3)
P 		707.6
(2.3)
P 		782.5
(3)
P 		167.6
(-3)
P 		615
C 552.4
(0.1)
P 		712.7
(1.3)
P 		948.2
(3)
P 		127.6
(-3)
P 		821
avr 532.4
(0.3) 		670.5
(1.4) 		858.8
(3) 		135.8
(-3) 		723

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 181.9
(-3)
P 		611.3
(3)
P 		310.8
(-1.2)
P 		461.8
(0.9)
P 		440.3
(0.6)
P 		329.8
(-0.9)
P 		429
B 293
(-3)
P 		469.6
(0)
P 		333.4
(-2.3)
P 		389.7
(-1.3)
P 		643.8
(3)
P 		367.6
(-1.7)
P 		351
C 393.8
(0)
P 		407.2
(0.2)
P 		510.2
(1.8)
P 		199.5
(-3)
P 		584
(3)
P 		319.5
(-1.1)
P 		385
avr 289.6
(-3) 		496
(1.6) 		384.8
(-0.9) 		350.3
(-1.6) 		556
(3) 		339
(-1.9) 		266
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173774_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22486
Sequence Type Exemplar sequence
Representative Public ID CEK124G3F NCBI
Target Description CEK124G3F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y47G6A.19 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D70799 /WB_GENE_ID=Y47G6A.19 /WP=CE24363 /CHR=1 /FEA=Genomic Cluster /DEF=carboxypeptidase; C.elegans cDNA clone yk124g3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026592(10), NM_001026591(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026592 NCBI Caenorhabditis elegans Y47G6A.19b (carboxypeptidase) mRNA, complete cds. 10/11 None
NM_001026591 NCBI Caenorhabditis elegans Y47G6A.19a (carboxypeptidase) mRNA, complete cds. 10/11 None
GENEFINDER00000034088 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3523972:3528805:-1 9/11 None
Y47G6A.19b ENSEMBL cdna:known chromosome:CEL140:I:3523336:3529958:-1 gene:Y47G6A.19 10/11 None
Y47G6A.19a ENSEMBL cdna:known chromosome:CEL140:I:3523393:3529844:-1 gene:Y47G6A.19 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033985 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3523476-3529980(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y47G6A.19
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021763 Y47G6A.19b [Caenorhabditis elegans] gb|AAT81180.1| Hypothetical protein Y47G6A.19b [Caenorhabditis elegans] 0.0
blast NP_001021762 Y47G6A.19a [Caenorhabditis elegans] gb|AAF60674.3| Hypothetical protein Y47G6A.19a [Caenorhabditis elegans] 0.0
blast CAE68958 Hypothetical protein CBG14938 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 5.1E-70
Pfam IPR003146 EMBL-EBI Peptidase M14A, carboxypeptidase activation peptide 4.1E-6
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 9.6E-10
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 5.1E-70
Sequence
Target Sequence 
>C. ELEGANS:173774_S_AT
ccttcactcatattcccaattgtggatttactcgtattcccacagaaaattcacatatgc
tccagatattgaagaaacgagacgagtggctgcaaaagctgtgcaagagctcggaagaat
gtatggaacaaagtatagacatggaaccggacctgagattatttgtgagtaccagcgggg
ggggtggccgcctaggaaattcaggccaaaactttctaggctatctaaaaattgtttcct
agaaattcaaatttttgcagacgcattctcaggcggctctaccgattgggcaaaagagac
tctgaaaatcaaatattcgtacacaattgagctgcgtcctggctacgaagagtggaacgg
ttttgtgctcgacaagaatcaactgatcccaactgcaaaggaaacttgggcaggtgtcac
tgttgttctagatgaggtcacaaatcagtggaagtcttcgagggtccgggagagtgaatt
gagccgtttgcgtcaagaaaaatgctccgatcggctgcctggctgtgcctattggttaca
gtcttcacctaatatttgccgtttttcccaatcaacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTCACTCATATTCCCAATTGTGG 545 269 1021 Antisense
GGATTTACTCGTATTCCCACAGAAA 25 511 1044 Antisense
TTTGCAGACGCATTCTCAGGCGGCT 622 667 1274 Antisense
GTACACAATTGAGCTGCGTCCTGGC 262 461 1339 Antisense
AGAATCAACTGATCCCAACTGCAAA 463 73 1395 Antisense
AACTTGGGCAGGTGTCACTGTTGTT 125 137 1423 Antisense
GAGAGTGAATTGAGCCGTTTGCGTC 79 395 1490 Antisense
AGAAAAATGCTCCGATCGGCTGCCT 398 73 1516 Antisense
CTGCCTGGCTGTGCCTATTGGTTAC 303 231 1535 Antisense
ACAGTCTTCACCTAATATTTGCCGT 682 107 1558 Antisense
TTTGCCGTTTTTCCCAATCAACAAT 313 669 1575 Antisense
Sequence Source Affymetrix Proprietary Database