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[173773_s_at]

Description C45838 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C16D9.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C45838 /WB_GENE_ID=C16D9.2 /WP=CE06838 /CHR=5 /FEA=Genomic Cluster /DEF=tyrosine-protein kinase; C.elegans cDNA clone yk402e9 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 14      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_total > 13      4grp_total > 39      6grp_cgc > 30      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 145.1
(3)
P 		78.2
(-3)
P 		109.1
(-0.2)
P 		83.9
(-2.5)
P 		67
B 120.8
(3)
P 		69.7
(-0.9)
P 		43
(-3)
P 		86.7
(0.4)
P 		78
C 111.1
(2.9)
P 		65.7
(-3)
P 		111.7
(3)
P 		98.2
(1.2)
P 		46
avr 125.7
(3) 		71.2
(-3) 		87.9
(-1.2) 		89.6
(-1) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 158
(1.6)
P 		183.9
(3)
P 		121.5
(-0.3)
P 		105
(-1.1)
P 		97.5
(-1.5)
P 		69.4
(-3)
P 		115
B 152.8
(3)
P 		137.4
(2)
P 		100
(-0.4)
P 		115.4
(0.6)
P 		85.9
(-1.3)
P 		60.2
(-3)
A 		93
C 191.3
(3)
P 		127.6
(0.2)
P 		137.9
(0.7)
P 		148.8
(1.1)
P 		92.4
(-1.3)
P 		54.8
(-3)
M 		137
avr 167.4
(3) 		149.6
(2) 		119.8
(0.3) 		123.1
(0.5) 		91.9
(-1.3) 		61.5
(-3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 52.8
(3)
P 		17
(-2.3)
P 		28.5
(-0.6)
P 		12.3
(-3)
P 		41
B 38.5
(3)
P 		17.2
(-1.5)
P 		10
(-3)
P 		18.5
(-1.2)
P 		29
C 36.8
(2.4)
P 		18.9
(-2.4)
P 		38.9
(3)
P 		16.6
(-3)
P 		22
avr 42.7
(3) 		17.7
(-2.6) 		25.8
(-0.8) 		15.8
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 29.1
(-1.5)
P 		65.4
(3)
P 		26.5
(-1.8)
P 		26.6
(-1.8)
P 		29.4
(-1.5)
P 		16.9
(-3)
P 		49
B 53.2
(3)
P 		45.7
(1.5)
P 		24.3
(-2.6)
P 		30.6
(-1.4)
P 		34.9
(-0.6)
P 		22.4
(-3)
A 		31
C 70.9
(3)
P 		38.9
(-0.7)
P 		35.1
(-1.1)
P 		29.9
(-1.7)
P 		29.9
(-1.7)
P 		18.3
(-3)
M 		53
avr 51.1
(3) 		50
(2.8) 		28.6
(-1.2) 		29
(-1.2) 		31.4
(-0.7) 		19.2
(-3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173773_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25213
Sequence Type Exemplar sequence
Representative Public ID C45838 NCBI
Target Description C45838 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C16D9.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C45838 /WB_GENE_ID=C16D9.2 /WP=CE06838 /CHR=5 /FEA=Genomic Cluster /DEF=tyrosine-protein kinase; C.elegans cDNA clone yk402e9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182327(11), NM_072721(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182327 NCBI Caenorhabditis elegans ROLler: helically twisted, animals roll when moving family member (rol-3) (rol-3) mRNA, complete cds. 11/11 None
NM_072721 NCBI Caenorhabditis elegans ROLler: helically twisted, animals roll when moving family member (rol-3) (rol-3) mRNA, complete cds. 11/11 None
SNAP00000043373 ENSEMBL cdna:SNAP chromosome:CEL140:V:8231110:8237268:-1 11/11 None
C16D9.2c ENSEMBL cdna:known chromosome:CEL140:V:8230891:8235929:-1 gene:C16D9.2 11/11 A 
C16D9.2a ENSEMBL cdna:known chromosome:CEL140:V:8231110:8240941:-1 gene:C16D9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179204 3 2 NM_072721 173773_s_at (11)
NM_182327 173772_at (11), 173773_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8230945-8240943(-) 100.0 100.0
Public Domain and Genome References
Ensembl C16D9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84864 Roller: helically twisted, animals roll when moving protein 3, isoform a [Caenorhabditis elegans] ref|NP_505122.3| ROLler: helically twisted, animals roll when moving family member (rol-3) [Caenorhabditis elegans] 0.0
blast AAN84866 Roller: helically twisted, animals roll when moving protein 3, isoform c [Caenorhabditis elegans] ref|NP_872127.1| ROLler: helically twisted, animals roll when moving family member (rol-3) [Caenorhabditis elegans] 0.0
blast CAE56943 Hypothetical protein CBG24788 [Caenorhabditis briggsae] 0.0
blast T29551 hypothetical protein C16D9.2 - Caenorhabditis elegans 0.0
blast CAE66100 Hypothetical protein CBG11320 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.8E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.8E-5
Pfam IPR000719 EMBL-EBI Protein kinase 4.8E-17
Pfam IPR000719 EMBL-EBI Protein kinase 8.7E-24
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.8E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.8E-5
Pfam IPR000719 EMBL-EBI Protein kinase 4.8E-17
Pfam IPR000719 EMBL-EBI Protein kinase 8.7E-24
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.8E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.8E-5
Pfam IPR000719 EMBL-EBI Protein kinase 4.8E-17
Pfam IPR000719 EMBL-EBI Protein kinase 8.7E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872127.1 1 702-724
NP_505122.3 1 1848-1870
C16D9.2c 1 702-724
C16D9.2a 1 1848-1870
SNAP00000043373 1 1079-1101
Sequence
Target Sequence 
>C. ELEGANS:173773_S_AT
ggattacggagcttcatcatcaatgtattctccaggatcttccaatcgaatttcaagcca
agttgaccctccaattggtagattgagctctgctccaggaattggcatagtcaatgatgc
atttgagagcagtaatccatcgctgaatttgagtagaagttgggccgggctttcaagaga
agtgaatcagaatcctgctggtgctggtagtagtggaacacttccacagcatacgaactc
tgctggacatttgagactccctggggtccaagttggagcaggtggcggccgtgtctacag
aaatgcctctggcggtggtggaccttcaaatcgaggccgcatcagtcaagtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTACGGAGCTTCATCATCAATG 572 509 6802 Antisense
GTATTCTCCAGGATCTTCCAATCGA 150 453 6826 Antisense
AAGCCAAGTTGACCCTCCAATTGGT 567 147 6856 Antisense
GAGCTCTGCTCCAGGAATTGGCATA 19 389 6886 Antisense
GTTGGGCCGGGCTTTCAAGAGAAGT 501 433 6960 Antisense
GAATCCTGCTGGTGCTGGTAGTAGT 81 331 6991 Antisense
GAACACTTCCACAGCATACGAACTC 222 351 7017 Antisense
TTGAGACTCCCTGGGGTCCAAGTTG 250 683 7052 Antisense
GCGGCCGTGTCTACAGAAATGCCTC 496 293 7086 Antisense
GGTGGTGGACCTTCAAATCGAGGCC 45 501 7115 Antisense
AATCGAGGCCGCATCAGTCAAGTCT 373 169 7130 Antisense
Sequence Source Affymetrix Proprietary Database