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[173769_s_at] chitinase

Description AU108992 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M176.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU108992 /WB_GENE_ID=M176.8 /WP=CE12474 /CHR=2 /FEA=Genomic Cluster /DEF=chitinase; Caenorhabditis elegans cDNA clone:yk701e6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 93      6grp_total > 84      4grp_total > 02      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2428
1 2 3 4 range
A 254.8
(-2.4)
P 		114.5
(-3)
P 		130.7
(-2.9)
P 		1563.3
(3)
P 		1449
B 290.8
(-2.6)
P 		144.7
(-3)
P 		188.9
(-2.9)
P 		2542.3
(3)
P 		2398
C 211.4
(-2.8)
P 		129.7
(-3)
P 		183.2
(-2.8)
P 		2174.7
(3)
P 		2045
avr 252.3
(-2.6) 		129.6
(-3) 		167.6
(-2.9) 		2093.4
(3) 		1964

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 538
1 2 3 4 5 6 range
A 90.5
(-3)
P 		164.1
(-1.9)
P 		280.9
(-0.2)
P 		492.9
(3)
P 		434
(2.1)
P 		407.6
(1.7)
P 		402
B 126.9
(-3)
P 		218.2
(-1.8)
P 		412.2
(0.8)
P 		580.2
(3)
P 		533
(2.4)
P 		571.8
(2.9)
P 		453
C 71.4
(-3)
P 		247
(-1)
P 		267.8
(-0.8)
P 		609.4
(3)
P 		450.9
(1.2)
P 		569.2
(2.6)
P 		538
avr 96.3
(-3) 		209.8
(-1.5) 		320.3
(-0.1) 		560.8
(3) 		472.6
(1.9) 		516.2
(2.4) 		465
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 517
1 2 3 4 range
A 92.8
(-1)
P 		24.9
(-3)
P 		34.2
(-2.7)
P 		228.8
(3)
P 		204
B 92.7
(-2.3)
P 		35.7
(-3)
P 		43.8
(-2.9)
P 		541.8
(3)
P 		506
C 70
(-2.4)
P 		37.3
(-3)
P 		63.9
(-2.5)
P 		366.7
(3)
P 		329
avr 85.2
(-2.1) 		32.6
(-3) 		47.3
(-2.7) 		379.1
(3) 		347

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 16.7
(-3)
P 		58.4
(-0.8)
P 		61.2
(-0.7)
P 		125
(2.7)
P 		131
(3)
P 		99.2
(1.3)
P 		114
B 44.2
(-3)
P 		72.6
(-2)
P 		100.1
(-1.1)
P 		153.7
(0.8)
P 		216.5
(3)
P 		213.2
(2.9)
P 		172
C 26.5
(-3)
P 		75.4
(-1.2)
P 		68.2
(-1.5)
P 		122.5
(0.5)
P 		145.9
(1.4)
P 		190.5
(3)
P 		164
avr 29.1
(-3) 		68.8
(-1.3) 		76.5
(-0.9) 		133.7
(1.5) 		164.5
(2.9) 		167.6
(3) 		139
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173769_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23422
Sequence Type Exemplar sequence
Representative Public ID AU108992 NCBI
Target Description AU108992 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M176.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU108992 /WB_GENE_ID=M176.8 /WP=CE12474 /CHR=2 /FEA=Genomic Cluster /DEF=chitinase; Caenorhabditis elegans cDNA clone:yk701e6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063617 NCBI Caenorhabditis elegans M176.8 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000025007 ENSEMBL cdna:SNAP chromosome:CEL140:II:9436640:9437290:-1 11/11 None
GENEFINDER00000025015 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9434064:9438006:-1 10/11 None
M176.8 ENSEMBL cdna:known chromosome:CEL140:II:9436596:9438201:-1 gene:M176.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9436603-9438109(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl M176.8
Entrez Gene 174500 Entrez gene
SwissProt Q21553 EMBL-EBI
WormBase CE12474 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01653 Hypothetical protein M176.8 [Caenorhabditis elegans] ref|NP_496018.1| M176.8 [Caenorhabditis elegans] 0.0
blast CAB01652 Hypothetical protein M176.7 [Caenorhabditis elegans] ref|NP_496017.1| protein KINase family member (kin-16) [Caenorhabditis elegans] sp|P34892|KIN16_CAEEL Receptor-like tyrosine-protein kinase kin-16 precursor gb|AAA28152.1| protein-tyrosine kinase 0.0
blast CAE67807 Hypothetical protein CBG13385 [Caenorhabditis briggsae] 1.0E-152
blast CAA93863 Hypothetical protein R09D1.3 [Caenorhabditis elegans] ref|NP_496019.1| R09D1.3 [Caenorhabditis elegans] 1.0E-120
blast CAB01653 Hypothetical protein M176.8 [Caenorhabditis elegans] ref|NP_496018.1| M176.8 [Caenorhabditis elegans] 1.0E-115
blast CAA93861 Hypothetical protein R09D1.1 [Caenorhabditis elegans] ref|NP_496021.1| R09D1.1 [Caenorhabditis elegans] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.4E-29
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 9.2E-63
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 4.8E-67
Pfam IPR000719 EMBL-EBI Protein kinase 1.5E-63
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.4E-29
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 9.2E-63
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496018.1 1 31-53
M176.8 1 31-53
GENEFINDER00000025015 3 21-43,392-409,455-477
Sequence
Target Sequence 
>C. ELEGANS:173769_S_AT
gggaccttggcctaatcaatggggtgttccaacgggaccatcttcaccaatgttctataa
tattggcgcacggaaaaacttctatgtggactggacaatgaagcattatacttgtaaact
caagcaacctagcatgcttaatatggttattccattctcggcaagaatttggaacaatgt
tcaagaagcaattgataatagaactgaagtatttagaaatgcagaactgaagaataatat
ggcagaaggaaggacacaaatatctcgatggacagccgagcatgaaggtcttgaactttc
accttcttcgtgggataatttaacaatgactccgtatatcttggatcttaaagcaaaaac
ctttttaacatttgaagataagagaagtataaaaataaaaacagattatgccaagaaaat
ggatctgggaggagtttggttatggtcagtggatatggatgataggcttaacagtcttct
cagtgacgttttttccaaggagttctgttcaactggcagtggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGACCTTGGCCTAATCAATGGGGT 405 493 670 Antisense
TCAATGGGGTGTTCCAACGGGACCA 366 625 685 Antisense
GGACCATCTTCACCAATGTTCTATA 521 523 704 Antisense
ATGGTTATTCCATTCTCGGCAAGAA 411 51 812 Antisense
ACAGCCGAGCATGAAGGTCTTGAAC 269 109 941 Antisense
ACTTTCACCTTCTTCGTGGGATAAT 595 101 964 Antisense
AATGACTCCGTATATCTTGGATCTT 60 165 994 Antisense
GGAGGAGTTTGGTTATGGTCAGTGG 259 515 1097 Antisense
GATAGGCTTAACAGTCTTCTCAGTG 140 423 1130 Antisense
TTCTCAGTGACGTTTTTTCCAAGGA 32 691 1146 Antisense
GGAGTTCTGTTCAACTGGCAGTGGG 322 517 1168 Antisense
Sequence Source Affymetrix Proprietary Database