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[173765_s_at] tyrosine-protein kinase

Description CEK021C9F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F09A5.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D35512 /WB_GENE_ID=F09A5.2 /WP=CE09274 /CHR=X /FEA=Genomic Cluster /DEF=tyrosine-protein kinase; C.elegans cDNA clone yk21c9 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 20      4grp_high_8_8 > 36      6grp_total > 22      4grp_total > 45      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 239.5
(2.9)
P 		185.5
(-3)
A 		240
(3)
P 		235.5
(2.5)
P 		55
B 258.6
(3)
P 		203.7
(-0.4)
A 		174.5
(-2.3)
P 		162.7
(-3)
P 		96
C 246.1
(0.6)
P 		315
(3)
P 		147
(-2.9)
P 		142.7
(-3)
P 		172
avr 248.1
(3) 		234.7
(1.8) 		187.2
(-2.4) 		180.3
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 245.5
(3)
M 		171.8
(-0.8)
P 		165.3
(-1.1)
P 		174.7
(-0.7)
P 		129.3
(-3)
P 		193.3
(0.3)
P 		116
B 242.2
(1.5)
P 		271.7
(3)
P 		244.2
(1.6)
P 		226.3
(0.7)
P 		155.4
(-3)
M 		180
(-1.7)
P 		116
C 159.9
(-1.9)
P 		259.6
(3)
P 		252.5
(2.7)
P 		252.5
(2.7)
P 		162.1
(-1.8)
P 		137.8
(-3)
P 		122
avr 215.9
(1.7) 		234.4
(3) 		220.7
(2) 		217.8
(1.8) 		148.9
(-3) 		170.4
(-1.5) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 87.2
(3)
P 		40.3
(-2.3)
A 		62.7
(0.2)
P 		34.5
(-3)
P 		53
B 82.5
(3)
P 		50.3
(-1)
A 		40.4
(-2.3)
P 		34.7
(-3)
P 		48
C 81.5
(2.2)
P 		90.6
(3)
P 		51.2
(-0.6)
P 		24.1
(-3)
P 		67
avr 83.7
(3) 		60.4
(0.3) 		51.4
(-0.7) 		31.1
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 45.3
(-0.8)
M 		61.1
(3)
P 		36
(-3)
P 		44.3
(-1)
P 		39
(-2.3)
P 		47.1
(-0.3)
P 		25
B 84.3
(1.8)
P 		90.5
(3)
P 		59.3
(-3)
P 		59.9
(-2.9)
P 		63.1
(-2.3)
M 		67.1
(-1.5)
P 		31
C 59.3
(-0.6)
P 		79.2
(3)
P 		64.3
(0.3)
P 		50.8
(-2.1)
P 		52.5
(-1.8)
P 		46.1
(-3)
P 		33
avr 63
(-0.3) 		76.9
(3) 		53.2
(-2.6) 		51.7
(-3) 		51.5
(-3) 		53.4
(-2.6) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173765_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26116
Sequence Type Exemplar sequence
Representative Public ID CEK021C9F NCBI
Target Description CEK021C9F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F09A5.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D35512 /WB_GENE_ID=F09A5.2 /WP=CE09274 /CHR=X /FEA=Genomic Cluster /DEF=tyrosine-protein kinase; C.elegans cDNA clone yk21c9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077781(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077781 NCBI Caenorhabditis elegans F09A5.2 (F09A5.2) mRNA, complete cds. 11/11 None
GENEFINDER00000018923 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13135026:13140655:1 11/11 None
SNAP00000018916 ENSEMBL cdna:SNAP chromosome:CEL140:X:13136739:13139451:1 11/11 None
F09A5.2 ENSEMBL cdna:known chromosome:CEL140:X:13135026:13139690:1 gene:F09A5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13135026-13139452(+) 100.0 100.0
Public Domain and Genome References
Gene Title tyrosine-protein kinase
Ensembl F09A5.2
Entrez Gene 181440 Entrez gene
SwissProt Q19238 EMBL-EBI
WormBase CE09274 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93646 Hypothetical protein F09A5.2 [Caenorhabditis elegans] ref|NP_510182.1| F09A5.2 [Caenorhabditis elegans] sp|Q19238|YS3J_CAEEL Putative tyrosine-protein kinase F09A5.2 in chromosome X 0.0
blast CAE61390 Hypothetical protein CBG05239 [Caenorhabditis briggsae] 0.0
blast CAE74901 Hypothetical protein CBG22767 [Caenorhabditis briggsae] 8.0E-76
blast CAE74901 Hypothetical protein CBG22767 [Caenorhabditis briggsae] 1.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 0.28
Pfam IPR000719 EMBL-EBI Protein kinase 9.7E-11
Pfam IPR000719 EMBL-EBI Protein kinase 6.4E-48
Pfam IPR000719 EMBL-EBI Protein kinase 7.0E-61
Pfam IPR001534 EMBL-EBI Transthyretin-like 5.0E-6
Pfam IPR000719 EMBL-EBI Protein kinase 0.28
Pfam IPR000719 EMBL-EBI Protein kinase 7.0E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510182.1 2 48-65,353-375
F09A5.2 2 48-65,353-375
GENEFINDER00000018923 3 48-70,213-232,353-375
SNAP00000018916 2 35-54,175-197
Sequence
Target Sequence 
>C. ELEGANS:173765_S_AT
ccgtctccccatcaaatggatgtctgtagaagcattgaaactgtacgaattctccacaaa
aactgatgtttggtcgtttggagtgttgttgttcgagattttctccatgggagatgttcc
gtatccaacaatacaacaagtagatatgctggaacaccttctcgctggtggccgcttgtc
acagccattgaaatgtccgaatgagatgtttaatatcatgcagaaatgttgggccgaaaa
gcctgaagacagaccagagtttaatgaaatgagaggagaaatcacagtgatgttgaactt
ggacgatgaaagttatggatatcttagcgtcgagtcacagggtggtccaaagtatacaca
attaacaatgcaagattcaaaggaaacagctccatgctccactcctggaggatcacaaga
tatggacgaagacggggattatgatagtggctcagaaggccactcgcaaggaacttgtgc
tcagctcgaccaggttttgactgagagatttggtgaagaacagaagaaggaaatcaagca
aatcttttgtgagatcacttcgaaatcaatgcgaggcaaacgccgtcaatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTCTCCCCATCAAATGGATGTCT 435 265 2075 Antisense
AGTGTTGTTGTTCGAGATTTTCTCC 453 59 2156 Antisense
TAGATATGCTGGAACACCTTCTCGC 497 653 2215 Antisense
TGGCCGCTTGTCACAGCCATTGAAA 162 545 2243 Antisense
CTTAGCGTCGAGTCACAGGGTGGTC 617 219 2397 Antisense
CAAAGGAAACAGCTCCATGCTCCAC 410 193 2452 Antisense
CATGCTCCACTCCTGGAGGATCACA 182 211 2467 Antisense
GCTCAGAAGGCCACTCGCAAGGAAC 485 301 2524 Antisense
GCAAGGAACTTGTGCTCAGCTCGAC 319 321 2540 Antisense
GCTCAGCTCGACCAGGTTTTGACTG 487 301 2553 Antisense
ATGCGAGGCAAACGCCGTCAATCGA 323 41 2643 Antisense
Sequence Source Affymetrix Proprietary Database