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[173763_s_at] glutathione S-transferase

Description AU112989_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R13D7.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU112989 /WB_GENE_ID=R13D7.7 /WP=CE18153 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk701d1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 73      6grp_total > 54      4grp_total > 11      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1280
1 2 3 4 range
A 491.7
(-1.9)
P 		383.6
(-2.4)
P 		259.7
(-3)
P 		1511
(3)
P 		1251
B 472.1
(-2)
P 		405.7
(-2.3)
P 		276.7
(-3)
P 		1451.9
(3)
P 		1175
C 540.5
(-1.5)
P 		338
(-2.5)
P 		231.4
(-3)
P 		1464.2
(3)
P 		1233
avr 501.4
(-1.8) 		375.8
(-2.4) 		255.9
(-3) 		1475.7
(3) 		1220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 511
1 2 3 4 5 6 range
A 540.7
(-1.3)
P 		624.9
(-0)
P 		817.3
(3)
P 		435.1
(-3)
P 		517.3
(-1.7)
P 		525.6
(-1.6)
P 		382
B 502.2
(-2)
P 		690.9
(0.6)
P 		863.6
(3)
P 		431.3
(-3)
P 		549.1
(-1.4)
P 		748.5
(1.4)
P 		432
C 352.5
(-3)
P 		699.4
(2.5)
P 		546.9
(0.1)
P 		539.6
(-0)
P 		408.4
(-2.1)
P 		728.1
(3)
P 		376
avr 465.1
(-3) 		671.7
(1.5) 		742.6
(3) 		468.7
(-2.9) 		491.6
(-2.4) 		667.4
(1.4) 		278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 245
1 2 3 4 range
A 179
(1.3)
P 		83.3
(-2.4)
P 		67.9
(-3)
P 		221.2
(3)
P 		153
B 150.6
(-0.9)
P 		100.2
(-2.1)
P 		64.1
(-3)
P 		309.4
(3)
P 		245
C 178.9
(0.5)
P 		97.2
(-2.4)
P 		80.6
(-3)
P 		246.9
(3)
P 		166
avr 169.5
(0.1) 		93.6
(-2.3) 		70.9
(-3) 		259.2
(3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 99.7
(-3)
P 		222.2
(3)
P 		178
(0.8)
P 		110.4
(-2.5)
P 		156.1
(-0.2)
P 		128
(-1.6)
P 		123
B 174.8
(-0.8)
P 		230
(1.2)
P 		209.7
(0.5)
P 		114.2
(-3)
P 		223.1
(1)
P 		279.1
(3)
P 		165
C 130.7
(-2)
P 		213.4
(1.7)
P 		139.2
(-1.6)
P 		108.5
(-3)
P 		132.1
(-2)
P 		243.8
(3)
P 		135
avr 135.1
(-1.7) 		221.9
(3) 		175.6
(0.5) 		111
(-3) 		170.4
(0.2) 		217
(2.7) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173763_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25235
Sequence Type Exemplar sequence
Representative Public ID AU112989 NCBI
Target Description AU112989_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R13D7.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU112989 /WB_GENE_ID=R13D7.7 /WP=CE18153 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk701d1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072493(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072493 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-41) (gst-41) mRNA, complete cds. 11/11 None
SNAP00000007950 ENSEMBL cdna:SNAP chromosome:CEL140:V:7401108:7401880:-1 11/11 None
GENEFINDER00000007957 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7401108:7401880:-1 11/11 None
R13D7.7 ENSEMBL cdna:known chromosome:CEL140:V:7401057:7401894:-1 gene:R13D7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7401072-7402779(-) 99.54 99.54
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-41
Ensembl R13D7.7
Entrez Gene 179127 Entrez gene
SwissProt Q966G8 EMBL-EBI
WormBase CE28770 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504894 Glutathione S-Transferase family member (gst-41) [Caenorhabditis elegans] gb|AAK72303.2| Glutathione s-transferase protein 41 [Caenorhabditis elegans] 1.0E-122
blast NP_503701 Glutathione S-Transferase family member (gst-10) [Caenorhabditis elegans] gb|AAF60580.1| Glutathione s-transferase protein 10 [Caenorhabditis elegans] sp|Q9N4X8|GSTPA_CAEEL Probable glutathione S-transferase P 10 (GST class-pi) 1.0E-93
blast CAE58193 Hypothetical protein CBG01287 [Caenorhabditis briggsae] 2.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 5.5E-15
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 2.7E-15
Sequence
Target Sequence 
>C. ELEGANS:173763_S_AT
gtacatccgtcttctactaattgataatggtatcaaatttgaagatattcgcttcccatg
gcaaagcaacgaatgggcagagcttaagaaaacaatgaagttcgggcaagttccatgtta
taaagttgatgggcaagaaattgtgcaagctggagcaattatgcgacacctgggaagagt
tcatgagctgaacggatccaatgaacaagaagcgacttttctagatatgctttttgatgc
gattcgtgatgttcgtttgaaatatattcgttacgtttattttgacgagggaagtcgtga
agacatggtcaacaagacccttccagaatctttggaaagattggaatgccaatttgaaat
tcaccccggagactttattattggcaacaaacttagttacaccgactatatactctttga
agaattagatatctatcacgttttggatggaaagattttggacaagtttccagctttgaa
ggcattttgggagcggatgtggcaaagaccaaacttgaagccttatctcgagaaacgaac
caaagacaatgtttggatcagtgccgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACATCCGTCTTCTACTAATTGAT 126 461 250 Antisense
GATATTCGCTTCCCATGGCAAAGCA 259 427 293 Antisense
GAAGTTCGGGCAAGTTCCATGTTAT 342 337 346 Antisense
GAGCAATTATGCGACACCTGGGAAG 281 391 402 Antisense
GCGACTTTTCTAGATATGCTTTTTG 417 289 461 Antisense
GGTCAACAAGACCCTTCCAGAATCT 286 503 556 Antisense
TGAAATTCACCCCGGAGACTTTATT 206 571 604 Antisense
GTTACACCGACTATATACTCTTTGA 9 447 645 Antisense
GGACAAGTTTCCAGCTTTGAAGGCA 627 513 709 Antisense
GACCAAACTTGAAGCCTTATCTCGA 5 383 756 Antisense
GACAATGTTTGGATCAGTGCCGTTG 274 365 794 Antisense
Sequence Source Affymetrix Proprietary Database