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[173762_s_at]

Description CEK039B7R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK669.1B /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33981 /WB_GENE_ID=ZK669.1B /WP=CE06642 /CHR=2 /FEA=Genomic Cluster /DEF=N-chimaerin; C.elegans cDNA clone yk39b7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 05      4grp_high_8_8 > 32      6grp_total > 24      4grp_total > 47      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 387.6
(3)
P 		146.5
(-1.5)
P 		64.3
(-3)
M 		107.5
(-2.2)
P 		323
B 364.3
(3)
P 		109.7
(-2.8)
P 		100.6
(-3)
P 		176.3
(-1.3)
P 		264
C 358
(3)
P 		152.3
(-2)
P 		108.9
(-3)
P 		130.3
(-2.5)
P 		249
avr 370
(3) 		136.2
(-2) 		91.3
(-3) 		138
(-2) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 85.3
(-1.4)
P 		219.8
(3)
P 		97.7
(-1)
P 		38.3
(-3)
A 		47.9
(-2.7)
A 		49.4
(-2.6)
A 		182
B 221.7
(3)
P 		109.5
(-1)
P 		98.9
(-1.3)
P 		89.9
(-1.7)
P 		55.6
(-2.9)
P 		52
(-3)
P 		170
C 204
(3)
P 		69.7
(-2.1)
P 		130.3
(0.2)
P 		97.5
(-1.1)
A 		97.8
(-1)
P 		46.3
(-3)
P 		158
avr 170.3
(3) 		133
(1.2) 		109
(-0) 		75.2
(-1.7) 		67.1
(-2.1) 		49.2
(-3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 141.1
(3)
P 		31.8
(-2.2)
P 		16.8
(-2.9)
M 		15.7
(-3)
P 		125
B 116.2
(3)
P 		27.1
(-2.8)
P 		23.3
(-3)
P 		37.6
(-2.1)
P 		93
C 118.5
(3)
P 		43.8
(-1.6)
P 		38
(-2)
P 		22
(-3)
P 		97
avr 125.3
(3) 		34.2
(-2.5) 		26
(-2.9) 		25.1
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 15.7
(-2.5)
P 		78.2
(3)
P 		21.3
(-2)
P 		9.7
(-3)
A 		14.5
(-2.6)
A 		12
(-2.8)
A 		69
B 77.1
(3)
P 		36.4
(-1.2)
P 		24
(-2.5)
P 		23.8
(-2.5)
P 		22.6
(-2.7)
P 		19.4
(-3)
P 		58
C 75.6
(3)
P 		21.3
(-2.4)
P 		33.2
(-1.2)
P 		19.6
(-2.6)
A 		31.6
(-1.4)
P 		15.5
(-3)
P 		60
avr 56.1
(3) 		45.3
(1.4) 		26.2
(-1.4) 		17.7
(-2.7) 		22.9
(-1.9) 		15.6
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173762_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23547
Sequence Type Exemplar sequence
Representative Public ID CEK039B7R NCBI
Target Description CEK039B7R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK669.1B /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33981 /WB_GENE_ID=ZK669.1B /WP=CE06642 /CHR=2 /FEA=Genomic Cluster /DEF=N-chimaerin; C.elegans cDNA clone yk39b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063265(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063265 NCBI Caenorhabditis elegans ZK669.1a (N-chimaerin) mRNA, complete cds. 11/11 None
ZK669.1a ENSEMBL cdna:known chromosome:CEL140:II:7912026:7925279:-1 gene:ZK669.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025898 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174278 2 1 NM_063265 173762_s_at (11), 188867_s_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7912414-7916395(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK669.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85468 Hypothetical protein ZK669.1a [Caenorhabditis elegans] emb|CAA86847.2| Hypothetical protein ZK669.1a [Caenorhabditis elegans] ref|NP_495666.2| ZK669.1a [Caenorhabditis elegans] 0.0
blast CAE59821 Hypothetical protein CBG03288 [Caenorhabditis briggsae] 0.0
blast CAA85469 Hypothetical protein ZK669.1b [Caenorhabditis elegans] emb|CAA86848.2| Hypothetical protein ZK669.1b [Caenorhabditis elegans] ref|NP_495667.2| ZK669.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000198 EMBL-EBI RhoGAP domain 2.2E-65
Sequence
Target Sequence 
>C. ELEGANS:173762_S_AT
tccaccccagaatagtatgattgtgtttgccgacgagtttgaactttttagagatcaacc
tgtttcctatgtgtaaatattttcttaaatggtactgtaagttcaaaaatttatcaattt
accaatcagaccaaaagccaggtcaacttagtttttacaaattgaaaaaaaaccacgaac
ttccagtttcattcagttcttctaagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACCCCAGAATAGTATGATTGTG 191 589 1904 Antisense
ATGATTGTGTTTGCCGACGAGTTTG 679 45 1920 Antisense
GAACTTTTTAGAGATCAACCTGTTT 613 321 1944 Antisense
GATCAACCTGTTTCCTATGTGTAAA 63 423 1956 Antisense
AACCTGTTTCCTATGTGTAAATATT 608 145 1960 Antisense
AATTTATCAATTTACCAATCAGACC 262 175 2011 Antisense
TTTACCAATCAGACCAAAAGCCAGG 519 665 2021 Antisense
GACCAAAAGCCAGGTCAACTTAGTT 259 383 2032 Antisense
AACCACGAACTTCCAGTTTCATTCA 90 145 2074 Antisense
CTTCCAGTTTCATTCAGTTCTTCTA 265 219 2083 Antisense
CAGTTTCATTCAGTTCTTCTAAGCC 193 207 2087 Antisense
Sequence Source Affymetrix Proprietary Database