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[173759_at]

Description AV200161_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R11A5.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV200161 /WB_GENE_ID=R11A5.2 /WP=CE12724 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk557f7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 68      6grp_total > 49      4grp_total > 15      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2521
1 2 3 4 range
A 2923.2
(2.9)
P 		895.6
(-3)
P 		1456.1
(-1.4)
P 		2947.6
(3)
P 		2052
B 2804.7
(1.3)
P 		1224.8
(-3)
P 		1384.5
(-2.6)
P 		3416.5
(3)
P 		2192
C 2743.8
(2.9)
P 		1436.5
(-3)
P 		1585.3
(-2.3)
P 		2759.5
(3)
P 		1323
avr 2823.9
(2.3) 		1185.6
(-3) 		1475.3
(-2.1) 		3041.2
(3) 		1856

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1542
1 2 3 4 5 6 range
A 2297.4
(0.6)
P 		2257.1
(0.5)
P 		1368.8
(-3)
P 		1470.9
(-2.6)
P 		2417.3
(1.1)
P 		2910.9
(3)
P 		1542
B 2694.5
(3)
P 		1764
(-1.4)
P 		1413.3
(-3)
P 		1940.8
(-0.5)
P 		1850.5
(-1)
P 		2546.4
(2.3)
P 		1281
C 2555.6
(3)
P 		1817.4
(-1.4)
P 		1748.7
(-1.8)
P 		1547.3
(-3)
P 		1819.1
(-1.4)
P 		2434.2
(2.3)
P 		1008
avr 2515.8
(2.4) 		1946.2
(-0.7) 		1510.3
(-3) 		1653
(-2.2) 		2029
(-0.2) 		2630.5
(3) 		1120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 870
1 2 3 4 range
A 1064.3
(3)
P 		194.4
(-3)
P 		380.7
(-1.7)
P 		431.5
(-1.4)
P 		870
B 894.4
(3)
P 		302.5
(-3)
P 		320.8
(-2.8)
P 		728.1
(1.3)
P 		592
C 908.3
(3)
P 		413
(-3)
P 		552.5
(-1.3)
P 		465.3
(-2.4)
P 		495
avr 955.7
(3) 		303.3
(-3) 		418
(-1.9) 		541.6
(-0.8) 		652

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 652
1 2 3 4 5 6 range
A 423.5
(-1.5)
P 		802.7
(3)
P 		298.1
(-3)
P 		373.1
(-2.1)
P 		729.4
(2.1)
P 		708.7
(1.9)
P 		505
B 937.6
(2.9)
P 		587.2
(-0.6)
P 		343.2
(-3)
P 		514
(-1.3)
P 		751.9
(1)
P 		949.6
(3)
P 		606
C 947.2
(3)
P 		554.6
(-0.7)
P 		445.1
(-1.7)
P 		311.2
(-3)
P 		588.6
(-0.4)
P 		814.9
(1.8)
P 		636
avr 769.4
(2.3) 		648.2
(0.7) 		362.1
(-3) 		399.4
(-2.5) 		690
(1.3) 		824.4
(3) 		462
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173759_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23137
Sequence Type Exemplar sequence
Representative Public ID AV200161 NCBI
Target Description AV200161_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R11A5.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV200161 /WB_GENE_ID=R11A5.2 /WP=CE12724 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk557f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059771 NCBI Caenorhabditis elegans R11A5.2 (R11A5.2) mRNA, complete cds. 11/11 None
R11A5.2 ENSEMBL cdna:known chromosome:CEL140:I:7865948:7867543:-1 gene:R11A5.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7865889-7867461(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11A5.2
Entrez Gene 172554 Entrez gene
SwissProt O45717 EMBL-EBI
WormBase CE12724 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05597 Hypothetical protein R11A5.2 [Caenorhabditis elegans] ref|NP_492172.1| R11A5.2 [Caenorhabditis elegans] 1.0E-146
blast CAE56126 Hypothetical protein CBG23735 [Caenorhabditis briggsae] 1.0E-104
blast AAX27677 SJCHGC01565 protein [Schistosoma japonicum] 5.0E-10
Sequence
Target Sequence 
>C. ELEGANS:173759_AT
acgacacgggcttaacatttcattttttggtttttctcacctttctcgcatactgtgact
tttcattcactcagggatcctccatttcatcatttccttcgtttctttccgttattattc
ttttccatgacatcctgtatcatgcttatgttttattcccacccaattggtattagaccc
cgattttatttgccccgccttactgttgctcaatataagttccacgttcgccattcaccc
acattattttccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACACGGGCTTAACATTTCATTT 295 91 881 Antisense
CTTTCTCGCATACTGTGACTTTTCA 328 223 921 Antisense
GACTTTTCATTCACTCAGGGATCCT 197 371 937 Antisense
TCTTTCCGTTATTATTCTTTTCCAT 689 615 984 Antisense
TTCTTTTCCATGACATCCTGTATCA 59 691 998 Antisense
ATCATGCTTATGTTTTATTCCCACC 329 29 1019 Antisense
TTATTCCCACCCAATTGGTATTAGA 442 677 1033 Antisense
TGGTATTAGACCCCGATTTTATTTG 389 551 1048 Antisense
CCCGCCTTACTGTTGCTCAATATAA 121 261 1074 Antisense
CAATATAAGTTCCACGTTCGCCATT 710 179 1091 Antisense
CATTCACCCACATTATTTTCCAAAT 676 215 1112 Antisense
Sequence Source Affymetrix Proprietary Database