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[173758_at]

Description AV187355 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T24G10.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV187355 /WB_GENE_ID=T24G10.2 /WP=CE00769 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk510h11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 87      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 97      6grp_total > 87      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 913
1 2 3 4 range
A 759.6
(-3)
P 		790.9
(-2.5)
P 		818
(-2)
P 		1121.9
(3)
P 		362
B 878.4
(-2.5)
P 		865.4
(-2.6)
P 		804
(-3)
P 		1672.9
(3)
P 		869
C 884.9
(-2.4)
P 		902.6
(-2.3)
P 		819.5
(-3)
P 		1485.2
(3)
P 		666
avr 841
(-2.7) 		853
(-2.6) 		813.8
(-3) 		1426.7
(3) 		613

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 841
1 2 3 4 5 6 range
A 1117.1
(0.9)
P 		872.6
(-1)
P 		625.9
(-3)
P 		1009.5
(0)
P 		1211.8
(1.6)
P 		1383.7
(3)
P 		758
B 951.4
(0.5)
P 		846.9
(-0.4)
P 		543.2
(-3)
P 		1213
(2.7)
P 		941
(0.4)
P 		1246.6
(3)
P 		703
C 743.5
(-3)
P 		903.4
(-1.5)
P 		800.5
(-2.5)
P 		997.2
(-0.6)
P 		958.6
(-0.9)
P 		1372.7
(3)
P 		629
avr 937.3
(-0.5) 		874.3
(-1.1) 		656.5
(-3) 		1073.2
(0.7) 		1037.1
(0.4) 		1334.3
(3) 		678
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 276.6
(3)
P 		171.7
(-2.6)
P 		213.9
(-0.3)
P 		164.2
(-3)
P 		112
B 280.1
(0.3)
P 		213.7
(-2)
P 		186.3
(-3)
P 		356.5
(3)
P 		170
C 292.9
(3)
P 		259.5
(-1.7)
P 		285.6
(2)
P 		250.4
(-3)
P 		43
avr 283.2
(3) 		215
(-3) 		228.6
(-1.8) 		257
(0.7) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 205.9
(-1.2)
P 		310.3
(1.6)
P 		136.3
(-3)
P 		256
(0.1)
P 		365.7
(3)
P 		336.9
(2.2)
P 		229
B 331
(0.6)
P 		281.9
(-0.3)
P 		131.9
(-3)
P 		321.3
(0.4)
P 		382.3
(1.5)
P 		464.9
(3)
P 		333
C 275.6
(-1.3)
P 		275.7
(-1.3)
P 		203.7
(-2.9)
P 		200.5
(-3)
P 		310.2
(-0.5)
P 		459.5
(3)
P 		259
avr 270.8
(-0.4) 		289.3
(0) 		157.3
(-3) 		259.3
(-0.7) 		352.7
(1.5) 		420.4
(3) 		263
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173758_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24251
Sequence Type Exemplar sequence
Representative Public ID AV187355 NCBI
Target Description AV187355 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T24G10.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV187355 /WB_GENE_ID=T24G10.2 /WP=CE00769 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk510h11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065758(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065758 NCBI Caenorhabditis elegans T24G10.2 (T24G10.2) mRNA, complete cds. 11/11 None
T24G10.2 ENSEMBL cdna:known chromosome:CEL140:III:5440730:5442711:-1 gene:T24G10.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019911 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5440739-5443019(-) 98.57 100.0
Public Domain and Genome References
Gene Title
Ensembl T24G10.2
Entrez Gene 175747 Entrez gene
SwissProt Q22749 EMBL-EBI
WormBase CE37993 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498159 T24G10.2 [Caenorhabditis elegans] gb|AAA50726.2| Hypothetical protein T24G10.2 [Caenorhabditis elegans] 1.0E-127
blast CAE61340 Hypothetical protein CBG05179 [Caenorhabditis briggsae] 2.0E-83
blast BAB01706.1 unnamed protein product [Arabidopsis thaliana] 9.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR003121 EMBL-EBI SWIB complex, BAF60b 1.8E-34
Sequence
Target Sequence 
>C. ELEGANS:173758_AT
taatttatcgttaatttcctcatttttgttataattatctcctacactcagctatacaca
caaaatctcccccattccacgttttttctccgcatttttcggcaataaactgccgaaatt
ccagggcccaatttcaaattcaaattttaaatgcaaaaatgaattttcccctttccccaa
acttctttcaattttctccccttcaaatgtgtacatttccttgaacttttcctccactga
gctctctgtcattattgctttctcatactttttactattatatttaatatatattataca
tatatctccttcattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTTATCGTTAATTTCCTCATTT 432 635 1259 Antisense
TAATTATCTCCTACACTCAGCTATA 259 635 1290 Antisense
TCAGCTATACACACAAAATCTCCCC 352 625 1306 Antisense
TTTTTTCTCCGCATTTTTCGGCAAT 223 675 1340 Antisense
ATTCCAGGGCCCAATTTCAAATTCA 606 5 1376 Antisense
TTTTCTCCCCTTCAAATGTGTACAT 233 677 1450 Antisense
TGTACATTTCCTTGAACTTTTCCTC 638 559 1468 Antisense
TCCACTGAGCTCTCTGTCATTATTG 546 587 1491 Antisense
CTCTCTGTCATTATTGCTTTCTCAT 394 231 1500 Antisense
CTTTCTCATACTTTTTACTATTATA 261 221 1516 Antisense
ATTATACATATATCTCCTTCATTCC 56 15 1551 Antisense
Sequence Source Affymetrix Proprietary Database