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[173757_s_at]

Description AU113894_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T27E4.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU113894 /WB_GENE_ID=T27E4.7 /WP=CE14259 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk712h11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 86      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 69      6grp_total > 77      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12751
1 2 3 4 range
A 1987
(-2.7)
P 		2487.9
(-2.4)
P 		1288.2
(-3)
P 		14039.5
(3)
P 		12751
B 2484.3
(-2.5)
P 		2117.2
(-2.7)
P 		1606.4
(-3)
P 		11492.9
(3)
P 		9887
C 2428.2
(-2.3)
P 		1947.7
(-2.6)
P 		1291
(-3)
P 		10952.2
(3)
P 		9661
avr 2299.8
(-2.5) 		2184.3
(-2.6) 		1395.2
(-3) 		12161.5
(3) 		10766

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3299
1 2 3 4 5 6 range
A 1576.8
(-3)
P 		1670.1
(-2.7)
P 		1876.8
(-1.9)
P 		1873.2
(-1.9)
P 		2371.5
(-0.1)
P 		3239.7
(3)
P 		1663
B 1339.7
(-3)
P 		1715.4
(-2.1)
P 		2031.2
(-1.3)
P 		2147.6
(-1.1)
P 		2536.1
(-0.1)
P 		3851.7
(3)
P 		2512
C 1153.1
(-3)
P 		1620
(-2.2)
P 		1397.6
(-2.6)
P 		2169.7
(-1.2)
P 		2106.9
(-1.3)
P 		4452
(3)
P 		3299
avr 1356.5
(-3) 		1668.5
(-2.2) 		1768.5
(-2) 		2063.5
(-1.3) 		2338.2
(-0.6) 		3847.8
(3) 		2491
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2112
1 2 3 4 range
A 723.5
(-1.6)
P 		540.1
(-2.3)
P 		336.8
(-3)
P 		2055.1
(3)
P 		1718
B 792.2
(-1.8)
P 		522.9
(-2.6)
P 		372.2
(-3)
P 		2449.1
(3)
P 		2077
C 803.8
(-1.5)
P 		560
(-2.5)
P 		450
(-3)
P 		1846.7
(3)
P 		1397
avr 773.2
(-1.7) 		541
(-2.5) 		386.3
(-3) 		2117
(3) 		1731

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1200
1 2 3 4 5 6 range
A 290.7
(-3)
P 		594
(0.7)
P 		408.7
(-1.6)
P 		475.1
(-0.8)
P 		715.6
(2.1)
P 		788.8
(3)
P 		498
B 466.1
(-3)
P 		571
(-2.4)
P 		493.2
(-2.8)
P 		568.8
(-2.4)
P 		1030.4
(0.5)
P 		1436.3
(3)
P 		970
C 427.4
(-2.6)
P 		494.3
(-2.3)
P 		355.7
(-3)
P 		436.3
(-2.6)
P 		681.7
(-1.3)
P 		1490.3
(3)
P 		1135
avr 394.7
(-3) 		553.1
(-1.9) 		419.2
(-2.8) 		493.4
(-2.3) 		809.2
(-0.1) 		1238.5
(3) 		844
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173757_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25282
Sequence Type Exemplar sequence
Representative Public ID AU113894 NCBI
Target Description AU113894_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T27E4.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU113894 /WB_GENE_ID=T27E4.7 /WP=CE14259 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk712h11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072952 NCBI Caenorhabditis elegans T27E4.7 (T27E4.7) mRNA, complete cds. 11/11 None
GENEFINDER00000044645 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9077677:9078866:-1 11/11 None
T27E4.7.1 ENSEMBL cdna:known chromosome:CEL140:V:9077370:9079224:-1 gene:T27E4.7 11/11 None
T27E4.7.2 ENSEMBL cdna:known chromosome:CEL140:V:9077419:9078909:-1 gene:T27E4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9077450-9078868(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27E4.7
Entrez Gene 179285 Entrez gene
SwissProt Q23055 EMBL-EBI
WormBase CE14259 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04838 Hypothetical protein T27E4.7 [Caenorhabditis elegans] ref|NP_505353.1| T27E4.7 [Caenorhabditis elegans] 3.0E-26
blast CAE72092 Hypothetical protein CBG19181 [Caenorhabditis briggsae] 6.0E-24
Sequence
Target Sequence 
>C. ELEGANS:173757_S_AT
gaaacttctgaaatttgttggaagaggagatcaagtacaatcttccaaatcttgcctcgc
ccagatctacgagcaaagaaaaaagcaaagacaacggtcgtcaatcaactctcaattctc
ccatatcgagccaatgccaacgattttggaagaagatgaattctcgatggcagccgaatg
ccgttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTTCTGAAATTTGTTGGAAGA 316 357 49 Antisense
CCTCGCCCAGATCTACGAGCAAAGA 6 267 103 Antisense
AAGCAAAGACAACGGTCGTCAATCA 381 151 131 Antisense
GACAACGGTCGTCAATCAACTCTCA 486 365 138 Antisense
TCTCAATTCTCCCATATCGAGCCAA 272 613 158 Antisense
AATTCTCCCATATCGAGCCAATGCC 225 177 162 Antisense
TCCCATATCGAGCCAATGCCAACGA 472 597 167 Antisense
GAGCCAATGCCAACGATTTTGGAAG 329 385 176 Antisense
GAAGATGAATTCTCGATGGCAGCCG 37 339 200 Antisense
GAATTCTCGATGGCAGCCGAATGCC 277 325 206 Antisense
CTCGATGGCAGCCGAATGCCGTTGA 436 233 211 Antisense
Sequence Source Affymetrix Proprietary Database