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[173756_at]

Description AU113894_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T27E4.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU113894 /WB_GENE_ID=T27E4.7 /WP=CE14259 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk712h11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 59      6grp_total > 87      4grp_total > 03      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11659
1 2 3 4 range
A 3031.7
(-2.5)
P 		2469.3
(-2.8)
P 		2048.5
(-3)
P 		13310.6
(3)
P 		11262
B 2403.2
(-2.6)
P 		2462.9
(-2.6)
P 		1651.4
(-3)
P 		12629.2
(3)
P 		10978
C 2756.5
(-2.5)
P 		2707.5
(-2.5)
P 		1757.9
(-3)
P 		12977.7
(3)
P 		11220
avr 2730.5
(-2.5) 		2546.6
(-2.6) 		1819.3
(-3) 		12972.5
(3) 		11153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3776
1 2 3 4 5 6 range
A 2546.5
(-2.4)
P 		2587.1
(-2.3)
P 		2223.7
(-3)
P 		3095.8
(-1.4)
P 		3727.8
(-0.2)
P 		5430.3
(3)
P 		3207
B 2245.1
(-2.9)
P 		2267.3
(-2.9)
P 		2186
(-3)
P 		3061.6
(-1.5)
P 		3784.8
(-0.2)
P 		5586.9
(3)
P 		3401
C 1810.6
(-3)
P 		2318.5
(-2.2)
P 		2439.5
(-2)
P 		3193
(-0.7)
P 		3413.5
(-0.3)
P 		5429.8
(3)
P 		3619
avr 2200.7
(-3) 		2391
(-2.7) 		2283.1
(-2.8) 		3116.8
(-1.3) 		3642
(-0.4) 		5482.3
(3) 		3282
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2309
1 2 3 4 range
A 1103.9
(-0.6)
P 		536
(-3)
P 		535.5
(-3)
P 		1948.4
(3)
P 		1413
B 766.4
(-2)
P 		608.3
(-2.4)
P 		382.7
(-3)
P 		2691.3
(3)
P 		2309
C 912.5
(-1.9)
P 		778.4
(-2.4)
P 		612.7
(-3)
P 		2188.2
(3)
P 		1576
avr 927.6
(-1.6) 		640.9
(-2.6) 		510.3
(-3) 		2276
(3) 		1766

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1614
1 2 3 4 5 6 range
A 469.4
(-3)
P 		920.1
(0.2)
P 		484.3
(-2.9)
P 		785.2
(-0.8)
P 		1124.9
(1.6)
P 		1322.1
(3)
P 		853
B 781.2
(-2)
P 		754.7
(-2.1)
P 		530.8
(-3)
P 		810.9
(-1.9)
P 		1537.7
(0.9)
P 		2083.3
(3)
P 		1553
C 671.1
(-2.7)
P 		707.4
(-2.6)
P 		620.9
(-3)
P 		642.1
(-2.9)
P 		1104.6
(-0.6)
P 		1817.7
(3)
P 		1197
avr 640.6
(-2.5) 		794.1
(-1.8) 		545.3
(-3) 		746.1
(-2) 		1255.7
(0.6) 		1741
(3) 		1196
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173756_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25282
Sequence Type Exemplar sequence
Representative Public ID AU113894 NCBI
Target Description AU113894_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T27E4.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU113894 /WB_GENE_ID=T27E4.7 /WP=CE14259 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk712h11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072952 NCBI Caenorhabditis elegans T27E4.7 (T27E4.7) mRNA, complete cds. 11/11 None
T27E4.7.1 ENSEMBL cdna:known chromosome:CEL140:V:9077370:9079224:-1 gene:T27E4.7 11/11 None
T27E4.7.2 ENSEMBL cdna:known chromosome:CEL140:V:9077419:9078909:-1 gene:T27E4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9077450-9078868(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27E4.7
Entrez Gene 179285 Entrez gene
SwissProt Q23055 EMBL-EBI
WormBase CE14259 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04838 Hypothetical protein T27E4.7 [Caenorhabditis elegans] ref|NP_505353.1| T27E4.7 [Caenorhabditis elegans] 3.0E-26
blast CAE72092 Hypothetical protein CBG19181 [Caenorhabditis briggsae] 6.0E-24
Sequence
Target Sequence 
>C. ELEGANS:173756_AT
ccgaatgccgttgattgtctacttatcccattgtagctgtacacccgaatctcatacaac
aatccacagggtcctcatcgtttgacccgaacctcgctcactgtgtctagtcataggagg
actatacttcctccgcacttggaaccatctctctctctctcaatcccaacgggtgtctca
atacgagtagtagcaacgggaatcttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGAATGCCGTTGATTGTCTACTTA 203 263 222 Antisense
GTTGATTGTCTACTTATCCCATTGT 618 437 231 Antisense
TTATCCCATTGTAGCTGTACACCCG 76 681 244 Antisense
GCTGTACACCCGAATCTCATACAAC 372 295 257 Antisense
TACAACAATCCACAGGGTCCTCATC 484 641 276 Antisense
CAGGGTCCTCATCGTTTGACCCGAA 268 207 288 Antisense
CCTCGCTCACTGTGTCTAGTCATAG 577 267 313 Antisense
AGGAGGACTATACTTCCTCCGCACT 194 57 336 Antisense
TCTCTCAATCCCAACGGGTGTCTCA 582 611 377 Antisense
TCCCAACGGGTGTCTCAATACGAGT 37 597 385 Antisense
GAGTAGTAGCAACGGGAATCTTCAT 554 395 406 Antisense
Sequence Source Affymetrix Proprietary Database