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[173753_s_at]

Description AV194982 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y73F8A.34 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV194982 /WB_GENE_ID=Y73F8A.34 /WP=CE25598 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk636c1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 95      6grp_total > 97      4grp_total > 05      6grp_highest_sub > Da      6grp_cgc > 69      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 449
1 2 3 4 range
A 479.5
(-1.3)
P 		522.6
(-0.7)
P 		367.2
(-3)
P 		774.6
(3)
P 		407
B 566.7
(0.9)
P 		378.8
(-3)
P 		474.1
(-1)
P 		667.2
(3)
P 		288
C 572.3
(1)
P 		325.6
(-3)
P 		480.8
(-0.5)
P 		696.6
(3)
P 		371
avr 539.5
(-0.4) 		409
(-3) 		440.7
(-2.4) 		712.8
(3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1095
1 2 3 4 5 6 range
A 468.3
(-2.8)
P 		426.3
(-3)
P 		450.4
(-2.9)
P 		682.3
(-1.6)
P 		1005.5
(0.2)
P 		1500.3
(3)
P 		1074
B 477.9
(-2.8)
P 		443.9
(-3)
P 		441.6
(-3)
P 		745.4
(-1.3)
P 		1193.5
(1.3)
P 		1493.4
(3)
P 		1052
C 561.8
(-2.1)
P 		405.6
(-3)
P 		508.5
(-2.4)
P 		585.9
(-1.9)
P 		1120.6
(1.2)
P 		1418.2
(3)
P 		1013
avr 502.7
(-2.6) 		425.3
(-3) 		466.8
(-2.8) 		671.2
(-1.6) 		1106.5
(0.9) 		1470.6
(3) 		1045
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 174.6
(3)
P 		113.4
(-1.7)
P 		96
(-3)
P 		113.4
(-1.7)
P 		79
B 180.7
(3)
P 		93.6
(-3)
P 		109.8
(-1.9)
P 		142.2
(0.3)
P 		87
C 189.4
(3)
P 		93.6
(-3)
P 		167.6
(1.6)
P 		117.5
(-1.5)
P 		96
avr 181.6
(3) 		100.2
(-3) 		124.5
(-1.2) 		124.4
(-1.2) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 471
1 2 3 4 5 6 range
A 86.3
(-3)
P 		151.6
(-1.6)
P 		98.1
(-2.7)
P 		173
(-1.1)
P 		303.4
(1.7)
P 		365.3
(3)
P 		279
B 166.3
(-2.2)
P 		147.8
(-2.5)
P 		107.2
(-3)
P 		197.4
(-1.8)
P 		484.9
(2)
P 		556.9
(3)
P 		450
C 208.3
(-1.5)
P 		123.8
(-2.9)
P 		129.4
(-2.8)
P 		117.8
(-3)
P 		362.6
(1.1)
P 		474.8
(3)
P 		357
avr 153.6
(-2.3) 		141.1
(-2.5) 		111.6
(-3) 		162.7
(-2.1) 		383.6
(1.6) 		465.7
(3) 		354
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173753_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24656
Sequence Type Exemplar sequence
Representative Public ID AV194982 NCBI
Target Description AV194982 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y73F8A.34 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV194982 /WB_GENE_ID=Y73F8A.34 /WP=CE25598 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk636c1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070468(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070468 NCBI Caenorhabditis elegans Y73F8A.34 (Y73F8A.34) mRNA, complete cds. 11/11 A 
SNAP00000030839 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15524179:15528490:-1 11/11 None
GENEFINDER00000030905 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15524179:15526067:-1 11/11 None
Y73F8A.34.1 ENSEMBL cdna:known chromosome:CEL140:IV:15524079:15528605:-1 gene:Y73F8A.34 11/11 None
Y73F8A.34.2 ENSEMBL cdna:known chromosome:CEL140:IV:15524089:15528491:-1 gene:Y73F8A.34 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15524185-15528497(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-349
Ensembl Y73F8A.34
Entrez Gene 178437 Entrez gene
SwissProt Q9NA31 EMBL-EBI
WormBase CE25598 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15324_AT IBR domain-containing protein at
ATH1-121501:253236_AT IBR domain-containing protein at
Protein Similarities
Method ID Description E-Value
blast CAB70234 Hypothetical protein Y73F8A.34 [Caenorhabditis elegans] ref|NP_502869.1| Y73F8A.34 [Caenorhabditis elegans] 0.0
blast CAE72928 Hypothetical protein CBG20248 [Caenorhabditis briggsae] 1.0E-174
blast AAB93645 Hypothetical protein C27A12.8 [Caenorhabditis elegans] ref|NP_491749.2| ARI (ubiquitin ligase Ariadne) homolog family member (ari-1) [Caenorhabditis elegans] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 2.6E-25
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 2.6E-25
Sequence
Target Sequence 
>C. ELEGANS:173753_S_AT
gaaaccgtgtccaaagtgttcagtgacaattgagaagaatggtggatgtaatcatatgtc
atgcaagagctcatcgtgtagatatgaattctgttggttgtgtcttggagattggaagaa
tcatgcgcaatgcaatagatacgtggaagacgacaacaagactgactctcgttcgctatc
gagaaagaatctacaacgatatcttttctactataatagattcatggcccatcagaatag
tatgaagttggagggaaagctctacgcgaaagtggaagtaaaaatggacctaatgcaggc
actctcaatgtcatggatcgaagttcaattccttcgacgagcggtcgatgcgctttgcga
gtgtcgccgtacgctgaaatatgcctacgccttcgcctactacctggaggcgaacaatat
gacgacactgttcgagacgaatcaaagtgatctcgaattggcgaccgagcagctgtccgg
gatgttggaaggcgatttggaggataatgatttggccgaactgaagcggaaggtccaaga
caagtaccgctacgtggagctccgccgcaaaaagatgctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACCGTGTCCAAAGTGTTCAGTG 646 357 841 Antisense
GTCATGCAAGAGCTCATCGTGTAGA 388 467 898 Antisense
GAATTCTGTTGGTTGTGTCTTGGAG 88 325 926 Antisense
ACAACAAGACTGACTCTCGTTCGCT 206 113 993 Antisense
AATGGACCTAATGCAGGCACTCTCA 655 161 1123 Antisense
GCAGGCACTCTCAATGTCATGGATC 514 311 1135 Antisense
ATTCCTTCGACGAGCGGTCGATGCG 4 9 1168 Antisense
CGGTCGATGCGCTTTGCGAGTGTCG 124 243 1182 Antisense
GTGTCGCCGTACGCTGAAATATGCC 208 487 1201 Antisense
TACGCTGAAATATGCCTACGCCTTC 663 647 1210 Antisense
AGCTCCGCCGCAAAAAGATGCTCGA 250 81 1398 Antisense
Sequence Source Affymetrix Proprietary Database