[Home] | [Total List]

[173748_at]

Description CEK009AYR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M01A8.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D28061 /WB_GENE_ID=M01A8.2 /WP=CE03491 /CHR=3 /FEA=Genomic Cluster /DEF=CAP-Gly domain; C.elegans cDNA clone yk9a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 12      6grp_total > 15      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1304
1 2 3 4 range
A 2538.2
(3)
P 		1695.6
(-2)
P 		1535.8
(-3)
P 		1645.4
(-2.3)
P 		1002
B 2572.7
(3)
P 		1584.7
(-1.5)
P 		1268.5
(-3)
P 		1690
(-1.1)
P 		1304
C 2267.3
(3)
P 		1614.6
(-2)
P 		1489
(-3)
P 		1700.3
(-1.4)
P 		778
avr 2459.4
(3) 		1631.6
(-1.8) 		1431.1
(-3) 		1678.6
(-1.6) 		1028

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2316
1 2 3 4 5 6 range
A 3264.2
(3)
P 		2432
(0.8)
P 		1563.1
(-1.5)
P 		1455.2
(-1.8)
P 		1500.2
(-1.7)
P 		1008.3
(-3)
P 		2256
B 2694.6
(3)
P 		2590
(2.6)
P 		1736.7
(-0.9)
P 		1754.5
(-0.8)
P 		1318.6
(-2.6)
P 		1228.5
(-3)
P 		1466
C 2275.4
(1.5)
P 		2724.7
(3)
P 		1863.2
(0.1)
P 		1460.6
(-1.3)
P 		1134.6
(-2.4)
P 		947.8
(-3)
P 		1777
avr 2744.7
(3) 		2582.2
(2.4) 		1721
(-0.6) 		1556.8
(-1.2) 		1317.8
(-2.1) 		1061.5
(-3) 		1683
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 683
1 2 3 4 range
A 924.2
(3)
P 		368.1
(-1.9)
P 		401.5
(-1.6)
P 		240.8
(-3)
P 		683
B 820.4
(3)
P 		391.4
(-1.9)
P 		293.9
(-3)
P 		360.1
(-2.2)
P 		527
C 750.6
(3)
P 		464.2
(-0.7)
P 		519
(0)
P 		286.7
(-3)
P 		464
avr 831.7
(3) 		407.9
(-1.7) 		404.8
(-1.8) 		295.9
(-3) 		536

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 692
1 2 3 4 5 6 range
A 601.7
(0.5)
P 		864.9
(3)
P 		340.4
(-2.1)
P 		369.1
(-1.8)
P 		452.7
(-1)
P 		245.5
(-3)
P 		619
B 937.6
(3)
P 		862.1
(2.1)
P 		421.7
(-3)
P 		464.7
(-2.5)
P 		535.7
(-1.7)
P 		458.1
(-2.6)
P 		516
C 843.4
(3)
P 		831.4
(2.9)
P 		474.2
(-1)
P 		293.7
(-3)
P 		367.2
(-2.2)
P 		317.3
(-2.7)
P 		550
avr 794.2
(2.3) 		852.8
(3) 		412.1
(-2.2) 		375.8
(-2.6) 		451.9
(-1.7) 		340.3
(-3) 		513
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173748_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24336
Sequence Type Exemplar sequence
Representative Public ID CEK009AYR NCBI
Target Description CEK009AYR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M01A8.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D28061 /WB_GENE_ID=M01A8.2 /WP=CE03491 /CHR=3 /FEA=Genomic Cluster /DEF=CAP-Gly domain; C.elegans cDNA clone yk9a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027512 NCBI Caenorhabditis elegans M01A8.2b (M01A8.2) mRNA, complete cds. 11/11 None
M01A8.2b ENSEMBL cdna:known chromosome:CEL140:III:9260101:9268964:-1 gene:M01A8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176307 2 1 NM_001027512 173748_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9260117-9268941(-) 99.87 100.0
Public Domain and Genome References
Ensembl M01A8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH19085 Hypothetical protein M01A8.2b [Caenorhabditis elegans] ref|NP_001022683.1| M01A8.2b [Caenorhabditis elegans] 0.0
blast CAA81607 Hypothetical protein M01A8.2a [Caenorhabditis elegans] ref|NP_001022682.1| M01A8.2a [Caenorhabditis elegans] sp|P34531|YM92_CAEEL Hypothetical protein M01A8.2 in chromosome III 0.0
blast S40998 hypothetical protein M01A8.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000938 EMBL-EBI CAP-Gly domain 2.2E-29
Sequence
Target Sequence 
>C. ELEGANS:173748_AT
gtcatgtgattttgtaggctctctgtttttttttaatatatcaattatttctctagtttt
ctttgaaatctcgcaaagtaagttcgtaactctaggaatcgttggtattttttttatcaa
tacctgtgtgttcctagtagtatctctctatttagtacacatgactatcgcttaaaatcc
cgctctttgtggtccggttgtgtctcagttacgccccgcactccctgtttattacaagat
attattgcattaaattgtctcccctcgatctctcatgtcacctgtatgtctgtacaacga
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCATGTGATTTTGTAGGCTCTCTG 329 467 2687 Antisense
GATTTTGTAGGCTCTCTGTTTTTTT 448 429 2694 Antisense
AGTTCGTAACTCTAGGAATCGTTGG 450 63 2767 Antisense
TTATCAATACCTGTGTGTTCCTAGT 95 681 2800 Antisense
GTGTGTTCCTAGTAGTATCTCTCTA 156 489 2812 Antisense
GTATCTCTCTATTTAGTACACATGA 225 455 2826 Antisense
TGACTATCGCTTAAAATCCCGCTCT 301 571 2848 Antisense
CCGCACTCCCTGTTTATTACAAGAT 157 263 2902 Antisense
TTATTGCATTAAATTGTCTCCCCTC 233 679 2928 Antisense
TCTCTCATGTCACCTGTATGTCTGT 358 611 2955 Antisense
GTCACCTGTATGTCTGTACAACGAC 662 465 2963 Antisense
Sequence Source Affymetrix Proprietary Database