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[173747_at]

Description AV198325 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C17G10.4A /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV198325 /WB_GENE_ID=C17G10.4A /WP=CE16860 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk677f7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 40      6grp_total > 27      4grp_total > 30      6grp_highest_sub > Cu      6grp_cgc > 14      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 777
1 2 3 4 range
A 958.6
(3)
P 		332.9
(-2)
P 		214.8
(-3)
P 		530.7
(-0.5)
P 		744
B 667.2
(3)
P 		418.6
(-0.1)
P 		181.5
(-3)
P 		611.6
(2.3)
P 		486
C 790.7
(3)
P 		267.1
(-3)
P 		273.2
(-2.9)
P 		537
(0.1)
P 		524
avr 805.5
(3) 		339.5
(-1.8) 		223.2
(-3) 		559.8
(0.5) 		582

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 787
1 2 3 4 5 6 range
A 594.6
(0.6)
P 		770.3
(3)
P 		322.4
(-3)
P 		422.1
(-1.7)
P 		377.3
(-2.3)
P 		548.5
(0)
P 		448
B 1081.6
(3)
P 		651.5
(-0.7)
P 		552.9
(-1.6)
P 		440.5
(-2.6)
P 		391
(-3)
P 		551.3
(-1.6)
P 		691
C 804.2
(1.7)
P 		948.8
(3)
P 		409.8
(-1.9)
P 		294.5
(-3)
P 		319.5
(-2.8)
P 		613.4
(-0.1)
P 		654
avr 826.8
(3) 		790.2
(2.5) 		428.4
(-2.1) 		385.7
(-2.7) 		362.6
(-3) 		571.1
(-0.3) 		464
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 307
1 2 3 4 range
A 349
(3)
P 		72.3
(-2.7)
P 		56.2
(-3)
P 		77.7
(-2.6)
P 		293
B 212.8
(3)
P 		103.4
(-0.8)
P 		42
(-3)
P 		130.3
(0.1)
P 		171
C 261.7
(3)
P 		76.8
(-3)
P 		95.2
(-2.4)
P 		90.5
(-2.6)
P 		185
avr 274.5
(3) 		84.2
(-2.4) 		64.5
(-3) 		99.5
(-2) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 109.6
(-1.8)
P 		274
(3)
P 		70.2
(-3)
P 		107.1
(-1.9)
P 		113.9
(-1.7)
P 		133.5
(-1.1)
P 		204
B 376.4
(3)
P 		216.8
(-0.7)
P 		134.3
(-2.6)
P 		116.7
(-3)
P 		158.9
(-2)
P 		205.6
(-0.9)
P 		260
C 298.1
(3)
P 		289.5
(2.8)
P 		104.3
(-1.9)
P 		59.2
(-3)
P 		103.4
(-1.9)
P 		205.3
(0.7)
P 		239
avr 261.4
(3) 		260.1
(3) 		102.9
(-2.7) 		94.3
(-3) 		125.4
(-1.9) 		181.5
(0.1) 		167
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173747_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23615
Sequence Type Exemplar sequence
Representative Public ID AV198325 NCBI
Target Description AV198325 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C17G10.4A /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV198325 /WB_GENE_ID=C17G10.4A /WP=CE16860 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk677f7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170993(11), NM_001026798(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170993 NCBI Caenorhabditis elegans Cell Division Cycle related family member (cdc-14) (cdc-14) mRNA, complete cds. 11/11 None
NM_001026798 NCBI Caenorhabditis elegans Cell Division Cycle related family member (cdc-14) (cdc-14) mRNA, complete cds. 11/11 None
C17G10.4d ENSEMBL cdna:known chromosome:CEL140:II:5589179:5593343:-1 gene:C17G10.4 11/11 A 
C17G10.4c.1 ENSEMBL cdna:known chromosome:CEL140:II:5589179:5593395:-1 gene:C17G10.4 11/11 None
C17G10.4c.2 ENSEMBL cdna:known chromosome:CEL140:II:5589179:5593397:-1 gene:C17G10.4 11/11 None
C17G10.4e ENSEMBL cdna:known chromosome:CEL140:II:5589219:5593343:-1 gene:C17G10.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173945 5 2 NM_001026798 173747_at (11), 186610_s_at (10)
NM_062683 186608_s_at (11), 186698_s_at (11)
NM_062684 186610_s_at (10)
NM_062685 174820_s_at (11), 186698_s_at (11)
NM_170993 173747_at (11), 186610_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5589227-5593342(-) 100.0 100.0
Public Domain and Genome References
Ensembl C17G10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT74545 CDC-14 phosphatase isoform D [Caenorhabditis elegans] gb|AAM54206.1| Cell division cycle related protein 14, isoform d [Caenorhabditis elegans] ref|NP_740991.1| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] 0.0
blast AAT74542 CDC-14 phosphatase isoform A [Caenorhabditis elegans] gb|AAM54205.1| Cell division cycle related protein 14, isoform a [Caenorhabditis elegans] ref|NP_495085.2| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] 0.0
blast T34098 hypothetical protein C17G10.4a - Caenorhabditis elegans 0.0
blast AAT74546 CDC-14 phosphatase isoform E [Caenorhabditis elegans] gb|AAT68903.1| Cell division cycle related protein 14, isoform e [Caenorhabditis elegans] ref|NP_001021969.1| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] 0.0
blast AAT74544 CDC-14 phosphatase isoform C [Caenorhabditis elegans] gb|AAB93458.1| Cell division cycle related protein 14, isoform c [Caenorhabditis elegans] ref|NP_495086.1| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] gb|AAB94407.1| protein phosphatase CDC14 [Caenorhabditis elegans] pir||E88158 protein C17G10.4c [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.2E-15
Sequence
Target Sequence 
>C. ELEGANS:173747_AT
tcagataaactctcaacttctcataatttttcaaatttcataatattcactagttctcaa
acttttatcctatttctaaaatacagctcccagcaagcgattgacattttaccttgtcta
gtcctttctccgataataatgccataatattacatctgcctttacaaaccttagctttca
aacttgtcgatcgaacgacttttgtattcatgaattaatcattgtatgtatattcaaaaa
actgtatcatagtgcatgccaactgacgcaggcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGATAAACTCTCAACTTCTCATA 31 603 2133 Antisense
ATTTCATAATATTCACTAGTTCTCA 95 17 2167 Antisense
ATACAGCTCCCAGCAAGCGATTGAC 234 25 2213 Antisense
GACATTTTACCTTGTCTAGTCCTTT 680 369 2235 Antisense
GTCTAGTCCTTTCTCCGATAATAAT 93 467 2248 Antisense
AATGCCATAATATTACATCTGCCTT 519 167 2270 Antisense
ACATCTGCCTTTACAAACCTTAGCT 8 105 2284 Antisense
ACCTTAGCTTTCAAACTTGTCGATC 576 87 2300 Antisense
CGATCGAACGACTTTTGTATTCATG 44 249 2320 Antisense
AACTGTATCATAGTGCATGCCAACT 549 137 2372 Antisense
AGTGCATGCCAACTGACGCAGGCGT 456 57 2383 Antisense
Sequence Source Affymetrix Proprietary Database