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[173746_s_at]

Description C48998 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F15C11.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C48998 /WB_GENE_ID=F15C11.2 /WP=CE09413 /CHR=1 /FEA=Genomic Cluster /DEF=Ubiquitin family; C.elegans cDNA clone yk451h11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 20      4grp_high_8_8 > 23      6grp_highest_nonorm > 57      6grp_total > 36      4grp_total > 0      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 919
1 2 3 4 range
A 2162.7
(-2.9)
P 		2144.9
(-3)
P 		2507.3
(-0.1)
P 		2885.1
(3)
P 		740
B 2217.8
(-1.5)
P 		2105.4
(-3)
P 		2570.4
(3)
P 		2545
(2.7)
P 		465
C 2118.6
(-1.6)
P 		1966.6
(-3)
P 		2600.1
(3)
P 		2500.9
(2.1)
P 		634
avr 2166.4
(-2) 		2072.3
(-3) 		2559.3
(2.1) 		2643.7
(3) 		571

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 934
1 2 3 4 5 6 range
A 2535.9
(2.7)
P 		2575.1
(3)
P 		1641.5
(-3)
P 		2392.8
(1.8)
P 		1892.8
(-1.4)
P 		2432.1
(2.1)
P 		934
B 2323.2
(3)
P 		2241.9
(2.1)
P 		2031.4
(-0.2)
P 		2056.3
(0.1)
P 		1775.1
(-3)
P 		2194.1
(1.6)
P 		548
C 2460.8
(2.5)
P 		2146.5
(-0.3)
P 		2516.4
(3)
P 		1851.7
(-3)
P 		2083.6
(-0.9)
P 		2198.3
(0.1)
P 		665
avr 2440
(3) 		2321.2
(1.6) 		2063.1
(-1.3) 		2100.3
(-0.9) 		1917.2
(-3) 		2274.8
(1.1) 		523
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 485
1 2 3 4 range
A 787.4
(3)
P 		465.6
(-2.3)
P 		655.5
(0.8)
P 		422.3
(-3)
P 		365
B 707.2
(3)
P 		520
(-3)
P 		595.6
(-0.6)
P 		542.3
(-2.3)
P 		187
C 701.3
(0.5)
P 		565.4
(-1.2)
P 		906.2
(3)
P 		421.7
(-3)
P 		485
avr 732
(3) 		517
(-1.8) 		719.1
(2.7) 		462.1
(-3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 558
1 2 3 4 5 6 range
A 467.5
(-1.8)
P 		915.8
(3)
P 		357.5
(-3)
P 		606.9
(-0.3)
P 		571.2
(-0.7)
P 		592.1
(-0.5)
P 		558
B 808.4
(2.8)
P 		746.2
(1.7)
P 		493.3
(-3)
P 		544.6
(-2.1)
P 		721.2
(1.2)
P 		818.2
(3)
P 		325
C 912.1
(3)
P 		655
(0.1)
P 		640.5
(-0)
P 		372.4
(-3)
P 		674.2
(0.4)
P 		735.9
(1)
P 		540
avr 729.3
(2.1) 		772.3
(3) 		497.1
(-3) 		508
(-2.8) 		655.5
(0.5) 		715.4
(1.8) 		275
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173746_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22762
Sequence Type Exemplar sequence
Representative Public ID C48998 NCBI
Target Description C48998 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F15C11.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C48998 /WB_GENE_ID=F15C11.2 /WP=CE09413 /CHR=1 /FEA=Genomic Cluster /DEF=Ubiquitin family; C.elegans cDNA clone yk451h11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170894(11), NM_170895(11), NM_171839(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170894 NCBI Caenorhabditis elegans F15C11.2a (F15C11.2) mRNA, complete cds. 11/11 None
NM_170895 NCBI Caenorhabditis elegans F15C11.2c (F15C11.2) mRNA, complete cds. 11/11 None
NM_171839 NCBI Caenorhabditis elegans F15C11.2b (F15C11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000023823 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7032191:7036907:1 10/11 None
F15C11.2a.2 ENSEMBL cdna:known chromosome:CEL140:I:7030112:7037192:1 gene:F15C11.2 11/11 None
F15C11.2c ENSEMBL cdna:known chromosome:CEL140:I:7030114:7037186:1 gene:F15C11.2 11/11 None
F15C11.2b ENSEMBL cdna:known chromosome:CEL140:I:7030114:7036907:1 gene:F15C11.2 11/11 None
F15C11.2a.1 ENSEMBL cdna:known chromosome:CEL140:I:7030114:7037208:1 gene:F15C11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023818 7/11 Cross Hyb Matching Probes None
SNAP00000023819 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7030045-7036839(+) 99.93 100.0
Public Domain and Genome References
Ensembl F15C11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95799 Hypothetical protein F15C11.2a [Caenorhabditis elegans] emb|CAB10932.1| Hypothetical protein F15C11.2a [Caenorhabditis elegans] ref|NP_740883.1| F15C11.2a [Caenorhabditis elegans] 0.0
blast CAD44115 Hypothetical protein F15C11.2b [Caenorhabditis elegans] emb|CAD44155.1| Hypothetical protein F15C11.2b [Caenorhabditis elegans] ref|NP_740884.1| F15C11.2b [Caenorhabditis elegans] 0.0
blast CAD44116 Hypothetical protein F15C11.2c [Caenorhabditis elegans] emb|CAD44156.1| Hypothetical protein F15C11.2c [Caenorhabditis elegans] ref|NP_740885.1| F15C11.2c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 1.3E-18
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 4.7E-8
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 4.7E-8
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 4.7E-8
Sequence
Target Sequence 
>C. ELEGANS:173746_S_AT
attgcttgattcacctggcatcagctccctaatggagcagatgatgtccaatccaagtat
gcaggccagtatgttcagcccagaagtcatcaattcaattcgtcaaaatatgtcaaacaa
tcctggactcattgattccgttgttggacaaattccatcggctcgtgataacccacagat
ttccgaaggaattcgtagaagttttccacaaatgctcaacatggtgtctgatccatctgt
gatggaggcaatgagaaacccacgggtcagtgaagcattccgtcaaattcaagagggatt
ttcaactcttcgcagagaagcacctcaacttttgaagcttttccaagctggagcaatggg
aggtggagcattcggttctgatgccaatgcatcttctgctggggcaaactctgcaaacgg
acttgccgatttattcaattcaatgaatatgggaggaggaagagcctcatcgactgctgc
accagtgaatccggagcaaacctatgcatcacaactcgaacaacttcaatcgatgggctt
ctcggatcgtgccagaaatgtggcagggctgaccgcaacgttcggagatctcaacgcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCTTGATTCACCTGGCATCAGC 442 5 893 Antisense
GATGTCCAATCCAAGTATGCAGGCC 113 409 935 Antisense
TGCAGGCCAGTATGTTCAGCCCAGA 276 579 952 Antisense
TGGACAAATTCCATCGGCTCGTGAT 34 549 1037 Antisense
GGCTCGTGATAACCCACAGATTTCC 307 539 1052 Antisense
AACCCACGGGTCAGTGAAGCATTCC 79 147 1149 Antisense
GGAGCATTCGGTTCTGATGCCAATG 450 521 1257 Antisense
TCGACTGCTGCACCAGTGAATCCGG 382 597 1362 Antisense
CAAACCTATGCATCACAACTCGAAC 108 193 1389 Antisense
AATCGATGGGCTTCTCGGATCGTGC 161 169 1420 Antisense
GCAACGTTCGGAGATCTCAACGCGG 197 311 1467 Antisense
Sequence Source Affymetrix Proprietary Database