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[173741_s_at]

Description CEC5173_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y116A8C.34 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C10517 /WB_GENE_ID=Y116A8C.34 /WP=CE24152 /CHR=4 /FEA=Genomic Cluster /GEN=cyp-13 /DEF=C.elegans cDNA clone yk147f5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 65      6grp_total > 74      4grp_total > 04      6grp_cgc > 77      6grp_high1_sub > 04      6grp_cgc_sub > 04_05_06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 560
1 2 3 4 range
A 1136.1
(-1.9)
P 		1062.7
(-3)
P 		1107
(-2.4)
P 		1478.4
(3)
P 		416
B 1209
(-0.5)
P 		1128.5
(-1.5)
P 		998.7
(-3)
P 		1506.1
(3)
P 		507
C 1128.1
(-0.3)
P 		945.7
(-3)
P 		966.8
(-2.7)
P 		1354.3
(3)
P 		409
avr 1157.7
(-1.1) 		1045.6
(-2.7) 		1024.2
(-3) 		1446.3
(3) 		422

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 429
1 2 3 4 5 6 range
A 962.3
(-0.8)
P 		892.9
(-3)
P 		989.7
(0)
P 		1041
(1.6)
P 		933
(-1.7)
P 		1084.5
(3)
P 		192
B 944.1
(-1.6)
P 		855.8
(-3)
P 		1236.6
(3)
P 		1182.7
(2.2)
P 		1216.9
(2.7)
P 		1119.7
(1.2)
P 		381
C 848.7
(-2.4)
P 		807.2
(-3)
P 		982.3
(-0.5)
P 		1233
(3)
P 		1026.2
(0.1)
P 		1201
(2.5)
P 		426
avr 918.4
(-1.7) 		852
(-3) 		1069.5
(1.3) 		1152.2
(3) 		1058.7
(1.1) 		1135.1
(2.7) 		300
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 413.7
(3)
P 		230.7
(-2.6)
P 		289.4
(-0.8)
P 		216.4
(-3)
P 		197
B 385.5
(3)
P 		278.7
(-1.2)
P 		231.4
(-3)
P 		321
(0.5)
P 		154
C 373.4
(3)
P 		271.9
(-1.2)
P 		337
(1.5)
P 		228.4
(-3)
P 		145
avr 390.9
(3) 		260.4
(-2.8) 		285.9
(-1.6) 		255.3
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 177.4
(-3)
P 		317.6
(3)
P 		215.5
(-1.4)
P 		264
(0.7)
P 		281.5
(1.5)
P 		264
(0.7)
P 		140
B 328.5
(-1.8)
P 		284.9
(-3)
P 		300.3
(-2.6)
P 		313.3
(-2.2)
P 		494.4
(3)
P 		417.5
(0.8)
P 		210
C 314.6
(-0.4)
P 		246.3
(-3)
P 		250
(-2.9)
P 		247.9
(-2.9)
P 		332.1
(0.3)
P 		402
(3)
P 		156
avr 273.5
(-2) 		282.9
(-1.5) 		255.3
(-3) 		275.1
(-2) 		369.3
(3) 		361.2
(2.6) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173741_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24752
Sequence Type Exemplar sequence
Representative Public ID CEC5173 NCBI
Target Description CEC5173_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y116A8C.34 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C10517 /WB_GENE_ID=Y116A8C.34 /WP=CE24152 /CHR=4 /FEA=Genomic Cluster /GEN=cyp-13 /DEF=C.elegans cDNA clone yk147f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070633(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070633 NCBI Caenorhabditis elegans CYclophyliN family member (cyn-13) (cyn-13) mRNA, complete cds. 11/11 None
SNAP00000004105 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17111094:17116613:-1 11/11 None
Y116A8C.34.1 ENSEMBL cdna:known chromosome:CEL140:IV:17110722:17116622:-1 gene:Y116A8C.34 11/11 None
Y116A8C.34.2 ENSEMBL cdna:known chromosome:CEL140:IV:17111050:17116613:-1 gene:Y116A8C.34 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004161 8/11 Cross Hyb Matching Probes None
GENEFINDER00000004186 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17111069-17116620(-) 96.69 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cyn-13
Ensembl Y116A8C.34
Entrez Gene 178487 Entrez gene
SwissProt Q9U2S6 EMBL-EBI
WormBase CE24152 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18678_AT peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) at
ATH1-121501:251305_AT peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) at
CANINE:1585214_AT similar to Peptidyl-prolyl cis-trans isomerase E (PPIase E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) cfa
CANINE_2:CFA.7464.1.A1_AT similar to Peptidyl-prolyl cis-trans isomerase E (PPIase E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) cfa
CANINE_2:CFAAFFX.5512.1.S1_S_AT similar to Peptidyl-prolyl cis-trans isomerase E (PPIase E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) cfa
DROSOPHILA_2:1623009_AT cyclophilin-33 dm
DROSGENOME1:154718_AT cyclophilin-33 dm
CHICKEN:GGA.4709.1.S1_AT similar to peptidylprolyl isomerase E gga
CHICKEN:GGAAFFX.8521.1.S1_AT similar to peptidylprolyl isomerase E gga
HG-U95AV2:34365_AT peptidylprolyl isomerase E (cyclophilin E) hs
HG-U95AV2:34366_G_AT peptidylprolyl isomerase E (cyclophilin E) hs
HG-U133_PLUS_2:210502_S_AT peptidylprolyl isomerase E (cyclophilin E) hs
HG-U133A:210502_S_AT peptidylprolyl isomerase E (cyclophilin E) hs
HG-FOCUS:210502_S_AT peptidylprolyl isomerase E (cyclophilin E) hs
HG-U133A_2:210502_S_AT peptidylprolyl isomerase E (cyclophilin E) hs
HU35KSUBA:RC_AA476450_AT peptidylprolyl isomerase E (cyclophilin E) hs
HG-U133A:202494_AT peptidylprolyl isomerase E (cyclophilin E) hs
HG-U133_PLUS_2:202494_AT peptidylprolyl isomerase E (cyclophilin E) hs
HG-U133A_2:202494_AT peptidylprolyl isomerase E (cyclophilin E) hs
U133_X3P:G5174636_3P_AT peptidylprolyl isomerase E (cyclophilin E) hs
U133_X3P:G2828150_3P_X_AT peptidylprolyl isomerase E (cyclophilin E) hs
U133_X3P:G2828150_3P_A_AT peptidylprolyl isomerase E (cyclophilin E) hs
HG-U95AV2:34364_AT peptidylprolyl isomerase E (cyclophilin E) hs
HU35KSUBB:RC_Z38798_AT Peptidylprolyl isomerase E (cyclophilin E) hs
U133_X3P:HS.22516.0.A1_3P_AT Peptidylprolyl isomerase E (cyclophilin E) hs
HG-U133_PLUS_2:229375_AT Peptidylprolyl isomerase E (cyclophilin E) hs
HG-U133B:229375_AT Peptidylprolyl isomerase E (cyclophilin E) hs
HG-U95C:63583_AT Peptidylprolyl isomerase E (cyclophilin E) hs
HG-U95E:74774_AT Peptidylprolyl isomerase E (cyclophilin E) hs
MU11KSUBB:MSA.4773.0_S_AT peptidylprolyl isomerase E (cyclophilin E) mm
MU11KSUBB:MSA.19108.0_S_AT peptidylprolyl isomerase E (cyclophilin E) mm
MG-U74AV2:102278_AT peptidylprolyl isomerase E (cyclophilin E) mm
MG-U74CV2:168107_I_AT peptidylprolyl isomerase E (cyclophilin E) mm
MOE430A:1450657_AT peptidylprolyl isomerase E (cyclophilin E) mm
MOUSE430A_2:1450657_AT peptidylprolyl isomerase E (cyclophilin E) mm
MOUSE430_2:1450657_AT peptidylprolyl isomerase E (cyclophilin E) mm
MU19KSUBB:TC27053_AT Peptidylprolyl isomerase E (cyclophilin E) (Ppie), mRNA mm
RG-U34C:RC_AI104479_AT peptidylprolyl isomerase E (cyclophilin E) (predicted) rn
RAE230A:1389055_AT peptidylprolyl isomerase E (cyclophilin E) (predicted) rn
RAT230_2:1389055_AT peptidylprolyl isomerase E (cyclophilin E) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6457 protein folding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55151 Hypothetical protein Y116A8C.34 [Caenorhabditis elegans] ref|NP_503034.1| CYclophyliN family member (cyn-13) [Caenorhabditis elegans] 1.0E-167
blast CAE57456 Hypothetical protein CBG00420 [Caenorhabditis briggsae] 1.0E-158
blast AAW82658 cyclophilin [Haemonchus contortus] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.9E-25
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 4.5E-101
Sequence
Target Sequence 
>C. ELEGANS:173741_S_AT
aagcttccacgtgtctatctgggagtgaagattggaattcgatatattggacgaatagtg
atcgagttaagaactgacgttacaccgaaaactgccgaaaacttcagatgtttgtgcaca
ggagaacgaggattcggttatgaaggatcgatatttcatcggattattccaaaatttatg
cttcaaggcggtgactttacgaaaggagacggaaccggcgggaagtcgatctatggaacg
aaatttgatgatgagaatttcacgctccgccacacaatgcccggcacagtttcaatggcg
aactgcggtgcgaacacaaatggctcacaattcttcatttgcaccgagaaaaccgattgg
cttgacggaaaacacgtagtgttcggtcatgttgttgaaggaatgaatattgtacgacaa
gtcgaacagcaaggaactccgtctggcaaacctcagatggttgtgaaaatcgtggaaagc
ggggaaattgagccggaaaaacggattgccgccgaaaaattggcccagaaggcagttgtt
ccgggagccgagattcaggagccgcttccgcaggctatggagactta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTTCCACGTGTCTATCTGGGAG 692 149 422 Antisense
GGAACCGGCGGGAAGTCGATCTATG 370 527 632 Antisense
ATGATGAGAATTTCACGCTCCGCCA 589 45 669 Antisense
ATGCCCGGCACAGTTTCAATGGCGA 581 39 698 Antisense
AATGGCGAACTGCGGTGCGAACACA 59 161 715 Antisense
GGCTCACAATTCTTCATTTGCACCG 363 539 743 Antisense
CACGTAGTGTTCGGTCATGTTGTTG 372 197 794 Antisense
CTCCGTCTGGCAAACCTCAGATGGT 286 233 858 Antisense
GCCCAGAAGGCAGTTGTTCCGGGAG 153 287 944 Antisense
CCGGGAGCCGAGATTCAGGAGCCGC 563 265 962 Antisense
CGCTTCCGCAGGCTATGGAGACTTA 287 255 984 Antisense
Sequence Source Affymetrix Proprietary Database