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[173740_s_at] sulfate permease

Description CEC8803_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F41D9.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C10880 /WB_GENE_ID=F41D9.5 /WP=CE10242 /CHR=X /FEA=Genomic Cluster /DEF=sulfate permease; C.elegans cDNA clone yk155e5 : 3prime end, single read.
Cluster 6grp_total > 02      4grp_total > 49      6grp_cgc > 51      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 28
(-3)
A 		58.9
(0.1)
A 		88
(3)
M 		34.1
(-2.4)
A 		60
B 29
(-3)
A 		87
(3)
P 		86.1
(2.9)
P 		28.8
(-3)
A 		58
C 33.1
(-3)
A 		79.7
(3)
P 		78.2
(2.8)
P 		38.7
(-2.3)
A 		47
avr 30
(-3) 		75.2
(2) 		84.1
(3) 		33.9
(-2.6) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 27.9
(-0.4)
A 		34.7
(0.5)
A 		26.2
(-0.6)
A 		54.4
(3)
A 		46.5
(2)
A 		7.6
(-3)
A 		47
B 55.4
(1.9)
M 		66.7
(3)
P 		7.4
(-3)
A 		40.1
(0.3)
A 		52.5
(1.6)
M 		33.3
(-0.4)
A 		59
C 68.5
(2.2)
P 		76.2
(3)
P 		57.2
(1)
A 		72.6
(2.6)
A 		43.9
(-0.4)
M 		18.9
(-3)
A 		57
avr 50.6
(1.7) 		59.2
(3) 		30.3
(-1.4) 		55.7
(2.5) 		47.6
(1.2) 		19.9
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 10.2
(-1.3)
A 		12.8
(-0.4)
A 		23
(3)
M 		5
(-3)
A 		18
B 9.2
(-1.8)
A 		21.5
(3)
P 		20
(2.4)
P 		6.1
(-3)
A 		15
C 11
(-1.7)
A 		22.9
(1.7)
P 		27.3
(3)
P 		6.5
(-3)
A 		21
avr 10.1
(-1.6) 		19.1
(1.5) 		23.4
(3) 		5.9
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 5.1
(-1.4)
A 		12.3
(2.2)
A 		5.7
(-1.1)
A 		13.8
(2.9)
A 		14
(3)
A 		1.9
(-3)
A 		12
B 19.3
(2.1)
M 		22.2
(3)
P 		1.8
(-3)
A 		10.6
(-0.4)
A 		21.3
(2.7)
M 		12.4
(0.1)
A 		20
C 25.4
(3)
P 		23.2
(2.3)
P 		14.6
(-0.4)
A 		14.6
(-0.4)
A 		14.2
(-0.5)
M 		6.3
(-3)
A 		19
avr 16.6
(1.7) 		19.2
(3) 		7.4
(-2.8) 		13
(-0) 		16.5
(1.7) 		6.9
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173740_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26006
Sequence Type Exemplar sequence
Representative Public ID CEC8803 NCBI
Target Description CEC8803_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F41D9.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C10880 /WB_GENE_ID=F41D9.5 /WP=CE10242 /CHR=X /FEA=Genomic Cluster /DEF=sulfate permease; C.elegans cDNA clone yk155e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077023(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077023 NCBI Caenorhabditis elegans SULfate Permease family member (sulp-3) (sulp-3) mRNA, complete cds. 11/11 None
F41D9.5 ENSEMBL cdna:known chromosome:CEL140:X:8403584:8408207:-1 gene:F41D9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031097 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8403593-8408207(-) 100.0 100.0
Public Domain and Genome References
Gene Title sulfate permease
Gene Symbol sulp-3
Ensembl F41D9.5
Entrez Gene 181094 Entrez gene
WormBase CE38957 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.14288.1.S1_AT solute carrier family 26, member 7 cfa
CHICKEN:GGAAFFX.10147.1.S1_AT similar to Solute carrier family 26, member 7 gga
U133_X3P:HS2.150178.2.A1_3P_AT solute carrier family 26, member 7 hs
U133_X3P:HS.150178.0.A1_3P_AT solute carrier family 26, member 7 hs
HG-U133_PLUS_2:1552826_AT solute carrier family 26, member 7 hs
HG-U133_PLUS_2:1552827_S_AT solute carrier family 26, member 7 hs
HG-U133_PLUS_2:239006_AT solute carrier family 26, member 7 hs
HG-U133B:239006_AT solute carrier family 26, member 7 hs
HG-U95E:83185_AT solute carrier family 26, member 7 hs
U133_X3P:HS.115129.0.A1_3P_AT Solute carrier family 26, member 7 hs
HG-U133_PLUS_2:238214_AT Solute carrier family 26, member 7 hs
HG-U133B:238214_AT Solute carrier family 26, member 7 hs
HG-U95E:76110_AT Solute carrier family 26, member 7 hs
MOUSE430A_2:1425841_AT solute carrier family 26, member 7 mm
MOUSE430_2:1425841_AT solute carrier family 26, member 7 mm
MOE430A:1425841_AT solute carrier family 26, member 7 mm
MOE430B:1436279_AT Solute carrier family 26, member 7 (Slc26a7), mRNA mm
MOUSE430_2:1436279_AT Solute carrier family 26, member 7 (Slc26a7), mRNA mm
Protein Similarities
Method ID Description E-Value
blast AAX34432 anion transporter SULP-3b [Caenorhabditis elegans] 0.0
blast NP_509424 SULfate Permease family member (sulp-3) [Caenorhabditis elegans] sp|Q94225|YLDM_CAEEL Hypothetical protein F41D9.5 in chromosome X 0.0
blast AAB52608 Sulfate permease family protein 3 [Caenorhabditis elegans] gb|AAX34421.1| anion transporter SULP-3a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.3E-107
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 6.1E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509424.1 11 26-48,68-90,97-119,192-214,226-248,273-290,297-319,332-354,373-395,410-432,473-495
F41D9.5 11 26-48,68-90,97-119,192-214,226-248,273-290,297-319,332-354,373-395,410-432,473-495
Sequence
Target Sequence 
>C. ELEGANS:173740_S_AT
gatgaattccgacaggagcgctgacatttttgactcgaagctaaagtcagctcggcggcg
ctggaagagagatcaaaagtctgaaaaccgatgtaaactggtgatcgattgtgacggatt
tccctacgttgattatcttggtttatctactctgaaaagtgtttacgttgatttgcaagc
tgctggaatacaatgcttctttgttgtccaaaaatcagatttgaaaaaacttttccgtgc
cactgacttttacgaggtagttgacgaatccaaagtgttcaacaaagtaggagatgctgt
gaaagccgcggagcaacatatttgatctcctaaaaccacaaaagaaattttaacagcact
ggccagtattgcaacaaccgacaccgtgcttattgacgaggaatcaagtgatagtaatga
taacgatgacgctgaaatccaagagagaataaccgaagagtctgaaaattctgaagaggt
catgtcagaaacatccgtgtcgattgaagatgcaaccagtttaacatcgtcaagaaactc
catcaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAATTCCGACAGGAGCGCTGAC 666 409 1732 Antisense
GGAGCGCTGACATTTTTGACTCGAA 507 521 1746 Antisense
CGAAGCTAAAGTCAGCTCGGCGGCG 317 253 1767 Antisense
GCTCGGCGGCGCTGGAAGAGAGATC 451 299 1781 Antisense
GATCGATTGTGACGGATTTCCCTAC 62 417 1834 Antisense
ATTTCCCTACGTTGATTATCTTGGT 669 15 1849 Antisense
ATTATCTTGGTTTATCTACTCTGAA 540 13 1863 Antisense
TTTTCCGTGCCACTGACTTTTACGA 23 675 1962 Antisense
GGAGATGCTGTGAAAGCCGCGGAGC 242 519 2021 Antisense
GCAACAACCGACACCGTGCTTATTG 26 317 2102 Antisense
CATCGTCAAGAAACTCCATCAACTC 666 211 2256 Antisense
Sequence Source Affymetrix Proprietary Database