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[173738_at]

Description AV199612_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F47B10.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV199612 /WB_GENE_ID=F47B10.8 /WP=CE03358 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk548h4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 80      6grp_total > 39      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 221.8
(3)
P 		92.3
(-2.9)
P 		90.2
(-3)
P 		144.4
(-0.5)
P 		132
B 202
(3)
P 		126.7
(-0.4)
P 		67.4
(-3)
P 		121.6
(-0.6)
P 		135
C 199.2
(2.1)
P 		112.4
(-2.4)
P 		100.7
(-3)
P 		216.9
(3)
P 		116
avr 207.7
(3) 		110.5
(-1.8) 		86.1
(-3) 		161
(0.7) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 253
(1.2)
P 		175.1
(-1.4)
P 		126.4
(-3)
P 		203.4
(-0.5)
P 		308
(3)
P 		153.3
(-2.1)
P 		182
B 268
(1.9)
P 		219.6
(0.6)
P 		89.3
(-3)
P 		240.6
(1.2)
P 		306.1
(3)
P 		218.6
(0.6)
P 		217
C 236.9
(1.4)
P 		280.7
(3)
P 		119.9
(-3)
P 		150.8
(-1.8)
P 		230.7
(1.1)
P 		207.9
(0.3)
P 		161
avr 252.6
(2) 		225.1
(1) 		111.9
(-3) 		198.3
(0.1) 		281.6
(3) 		193.3
(-0.1) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 80.8
(3)
P 		20
(-3)
P 		23.6
(-2.6)
P 		21.1
(-2.9)
P 		61
B 64.4
(3)
P 		31.3
(-1.1)
P 		15.6
(-3)
P 		25.9
(-1.7)
P 		49
C 65.9
(3)
P 		32.3
(-3)
P 		35.1
(-2.5)
P 		36.6
(-2.2)
P 		34
avr 70.4
(3) 		27.9
(-2.6) 		24.8
(-3) 		27.9
(-2.6) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 46.6
(-1.2)
P 		62.3
(0.2)
P 		27.5
(-3)
P 		51.6
(-0.8)
P 		92.9
(3)
P 		37.3
(-2.1)
P 		65
B 93.2
(1.2)
P 		73.1
(0)
P 		21.7
(-3)
P 		63.7
(-0.5)
P 		124.4
(3)
P 		81.5
(0.5)
P 		103
C 87.8
(3)
P 		85.7
(2.8)
P 		30.5
(-3)
P 		30.3
(-3)
P 		74.6
(1.6)
P 		69.6
(1.1)
P 		58
avr 75.9
(1.2) 		73.7
(1) 		26.6
(-3) 		48.5
(-1.1) 		97.3
(3) 		62.8
(0.1) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173738_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25802
Sequence Type Exemplar sequence
Representative Public ID AV199612 NCBI
Target Description AV199612_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F47B10.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV199612 /WB_GENE_ID=F47B10.8 /WP=CE03358 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk548h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077422(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077422 NCBI Caenorhabditis elegans F47B10.8 (F47B10.8) mRNA, complete cds. 11/11 None
F47B10.8 ENSEMBL cdna:known chromosome:CEL140:X:10905171:10906503:-1 gene:F47B10.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10905181-10906504(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B10.8
Entrez Gene 181282 Entrez gene
SwissProt Q20508 EMBL-EBI
WormBase CE32424 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91988 Hypothetical protein F47B10.8 [Caenorhabditis elegans] ref|NP_509823.2| F47B10.8 [Caenorhabditis elegans] 1.0E-119
blast CAE70797 Hypothetical protein CBG17557 [Caenorhabditis briggsae] 4.0E-95
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509823.2 4 71-90,100-119,131-153,188-210
F47B10.8 4 71-90,100-119,131-153,188-210
Sequence
Target Sequence 
>C. ELEGANS:173738_AT
ggaacgcttataacctttgcaatgttttatctgaaatgtttaacctcgtgctttctattg
aactatctcttacacacaaacattatgttgatctcttatgtattccgaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACGCTTATAACCTTTGCAATGT 661 529 766 Antisense
AACCTTTGCAATGTTTTATCTGAAA 445 145 777 Antisense
ATCTGAAATGTTTAACCTCGTGCTT 600 33 794 Antisense
TTAACCTCGTGCTTTCTATTGAACT 261 683 805 Antisense
ACCTCGTGCTTTCTATTGAACTATC 120 89 808 Antisense
CGTGCTTTCTATTGAACTATCTCTT 490 245 812 Antisense
TCTATTGAACTATCTCTTACACACA 315 615 819 Antisense
GAACTATCTCTTACACACAAACATT 126 351 825 Antisense
CTCTTACACACAAACATTATGTTGA 687 229 832 Antisense
TATGTTGATCTCTTATGTATTCCGA 537 655 849 Antisense
GTTGATCTCTTATGTATTCCGAATT 68 439 852 Antisense
Sequence Source Affymetrix Proprietary Database