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[173737_at]

Description AU114760_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C01C10.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU114760 /WB_GENE_ID=C01C10.3 /WP=CE02449 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk728a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 98      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 69      6grp_total > 96      4grp_total > 03      6grp_cgc > 78      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6639
1 2 3 4 range
A 2417.2
(-1.4)
P 		1489.9
(-3)
P 		1497.9
(-3)
P 		4927.5
(3)
P 		3438
B 2329.4
(-2.2)
P 		1764.4
(-2.8)
P 		1512.7
(-3)
P 		7878.5
(3)
P 		6366
C 2118.4
(-2.2)
P 		1518.6
(-2.7)
P 		1239.1
(-3)
P 		7778.2
(3)
P 		6539
avr 2288.3
(-2) 		1591
(-2.8) 		1416.6
(-3) 		6861.4
(3) 		5445

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1866
1 2 3 4 5 6 range
A 1651.2
(-2.1)
P 		1854.4
(-1.5)
P 		1375
(-3)
P 		2226.5
(-0.3)
P 		2920
(2)
P 		3240.7
(3)
P 		1866
B 1893.1
(-2)
P 		1901.8
(-1.9)
P 		1703.2
(-3)
P 		2385.9
(0.7)
P 		2650.4
(2.2)
P 		2803.8
(3)
P 		1101
C 1930.2
(-1.2)
P 		1737.9
(-2.3)
P 		1631.4
(-3)
P 		2312.8
(1.2)
P 		2368
(1.5)
P 		2609.4
(3)
P 		978
avr 1824.8
(-1.8) 		1831.4
(-1.8) 		1569.9
(-3) 		2308.4
(0.4) 		2646.1
(1.9) 		2884.6
(3) 		1315
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1356
1 2 3 4 range
A 880.1
(3)
P 		323.4
(-3)
P 		391.6
(-2.3)
P 		721.3
(1.3)
P 		557
B 742.8
(-1.2)
P 		435.8
(-2.6)
P 		350.5
(-3)
P 		1678.9
(3)
P 		1328
C 701.3
(-1.2)
P 		436.6
(-3)
P 		431.9
(-3)
P 		1311.5
(3)
P 		880
avr 774.7
(-0.3) 		398.6
(-2.9) 		391.3
(-3) 		1237.2
(3) 		846

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 777
1 2 3 4 5 6 range
A 304.4
(-2.9)
P 		659.5
(0.7)
P 		299.4
(-3)
P 		564.7
(-0.3)
P 		881.1
(3)
P 		789
(2.1)
P 		582
B 658.7
(-0.8)
P 		633
(-1)
P 		413.6
(-3)
P 		631.9
(-1)
P 		1076.8
(3)
P 		1045.5
(2.7)
P 		663
C 715.5
(0.9)
P 		530.3
(-1.5)
P 		415.2
(-3)
P 		465.1
(-2.3)
P 		766.3
(1.6)
P 		873.5
(3)
P 		458
avr 559.5
(-0.9) 		607.6
(-0.4) 		376.1
(-3) 		553.9
(-1) 		908.1
(3) 		902.7
(2.9) 		532
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173737_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25767
Sequence Type Exemplar sequence
Representative Public ID AU114760 NCBI
Target Description AU114760_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C01C10.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU114760 /WB_GENE_ID=C01C10.3 /WP=CE02449 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk728a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076859(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076859 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-12) (acl-12) mRNA, complete cds. 11/11 None
C01C10.3 ENSEMBL cdna:known chromosome:CEL140:X:7439354:7442522:-1 gene:C01C10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7439412-7442520(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol acl-12
Ensembl C01C10.3
Entrez Gene 181001 Entrez gene
SwissProt Q11087 EMBL-EBI
WormBase CE02449 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB36850 Acyltransferase-like protein 12 [Caenorhabditis elegans] ref|NP_509260.1| ACyLtransferase-like family member (acl-12) [Caenorhabditis elegans] sp|Q11087|YT73_CAEEL Hypothetical protein C01C10.3 in chromosome X 0.0
blast CAE70215 Hypothetical protein CBG16693 [Caenorhabditis briggsae] 0.0
blast CAA94584 Hypothetical protein F08G5.2 [Caenorhabditis elegans] ref|NP_502370.1| ACyLtransferase-like family member (acl-13) [Caenorhabditis elegans] 1.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509260.1 1 45-67
C01C10.3 1 45-67
Sequence
Target Sequence 
>C. ELEGANS:173737_AT
atcccctctacgtttacatactggttatttcattctcacacattcttcctatggattgtc
acccactacattttgttacatttcttgtctgtactcaaattgttatctgcttctgaataa
tatttattatgatttcattgtttcccccaatttgtttccatgtcatcttgggtacttgat
ttgttattgagcaccacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCCCTCTACGTTTACATACTGGT 439 37 1219 Antisense
CATACTGGTTATTTCATTCTCACAC 49 215 1235 Antisense
ATTCTCACACATTCTTCCTATGGAT 393 11 1250 Antisense
CTTCCTATGGATTGTCACCCACTAC 292 219 1263 Antisense
GTCACCCACTACATTTTGTTACATT 504 465 1276 Antisense
GTTACATTTCTTGTCTGTACTCAAA 148 447 1293 Antisense
CTCAAATTGTTATCTGCTTCTGAAT 126 229 1312 Antisense
ATTATGATTTCATTGTTTCCCCCAA 527 13 1344 Antisense
CCCCAATTTGTTTCCATGTCATCTT 505 261 1363 Antisense
TCCATGTCATCTTGGGTACTTGATT 307 591 1375 Antisense
ACTTGATTTGTTATTGAGCACCACG 14 105 1392 Antisense
Sequence Source Affymetrix Proprietary Database