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[173736_at]

Description AV187269 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y11D7A.12 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV187269 /WB_GENE_ID=Y11D7A.12 /WP=CE20195 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk509g10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 87      4grp_high_8_8 > 04      6grp_highest_nonorm > 94      6grp_total > 87      4grp_total > 05      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 116.1
(-1)
P 		48.4
(-2.8)
A 		41.9
(-3)
M 		266.3
(3)
P 		224
B 144.1
(3)
P 		76
(-3)
P 		98
(-1.1)
P 		120.1
(0.9)
P 		68
C 109.4
(-2.2)
P 		104
(-3)
P 		124
(0.1)
P 		142.2
(3)
P 		38
avr 123.2
(-0.2) 		76.1
(-3) 		88
(-2.3) 		176.2
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1486
1 2 3 4 5 6 range
A 131.8
(-2.9)
P 		136.2
(-2.9)
P 		119.4
(-3)
P 		226.5
(-2.5)
P 		781
(0)
P 		1423.4
(3)
P 		1304
B 94.6
(-3)
P 		231
(-2.4)
P 		113.9
(-2.9)
P 		387.4
(-1.8)
P 		588.9
(-1)
P 		1580.3
(3)
P 		1486
C 113.1
(-3)
P 		183.1
(-2.4)
P 		110.1
(-3)
P 		239.5
(-2)
P 		615.3
(1.1)
P 		854.2
(3)
P 		744
avr 113.2
(-3) 		183.4
(-2.6) 		114.5
(-3) 		284.5
(-2.1) 		661.7
(-0.2) 		1286
(3) 		1173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 42.3
(3)
P 		10.5
(-3)
A 		11
(-2.9)
M 		39
(2.4)
P 		32
B 46
(3)
P 		18.8
(-3)
P 		22.7
(-2.1)
P 		25.6
(-1.5)
P 		27
C 36.2
(0.8)
P 		29.9
(-1.2)
P 		43.2
(3)
P 		24
(-3)
P 		19
avr 41.5
(3) 		19.7
(-3) 		25.6
(-1.4) 		29.5
(-0.3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 565
1 2 3 4 5 6 range
A 24.3
(-3)
P 		48.5
(-2.5)
P 		26
(-3)
P 		57.4
(-2.4)
P 		235.7
(0.9)
P 		346.6
(3)
P 		322
B 32.9
(-2.9)
P 		76.9
(-2.5)
P 		27.7
(-3)
P 		102.6
(-2.2)
P 		239.3
(-0.7)
P 		589.3
(3)
P 		562
C 41.9
(-2.7)
P 		55.9
(-2.4)
P 		28
(-3)
P 		48.2
(-2.5)
P 		199.1
(1)
P 		285.9
(3)
P 		258
avr 33
(-2.9) 		60.4
(-2.5) 		27.2
(-3) 		69.4
(-2.3) 		224.7
(0.1) 		407.3
(3) 		380
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173736_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24684
Sequence Type Exemplar sequence
Representative Public ID AV187269 NCBI
Target Description AV187269 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y11D7A.12 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV187269 /WB_GENE_ID=Y11D7A.12 /WP=CE20195 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk509g10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069217 NCBI Caenorhabditis elegans Y11D7A.12 (Y11D7A.12) mRNA, complete cds. 11/11 None
Y11D7A.12 ENSEMBL cdna:known chromosome:CEL140:IV:9261787:9264240:-1 gene:Y11D7A.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9261818-9263685(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y11D7A.12
Entrez Gene 177749 Entrez gene
SwissProt Q9XWR1 EMBL-EBI
WormBase CE35915 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21587 Hypothetical protein Y11D7A.12 [Caenorhabditis elegans] ref|NP_501618.2| Y11D7A.12 [Caenorhabditis elegans] 0.0
blast CAE69051 Hypothetical protein CBG15060 [Caenorhabditis briggsae] 1.0E-111
blast CAE71310 Hypothetical protein CBG18201 [Caenorhabditis briggsae] 1.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR007588 EMBL-EBI FLYWCH Zn-finger 5.8E-7
Sequence
Target Sequence 
>C. ELEGANS:173736_AT
gatcaagctgtgtaatttaaccgaatactgattgttttttatatgtgtaaaatgtaaaat
ttcctccactctccacctatctcattaaatattttctgtgacatttctccatcgaaactg
gtttttacccaatgtaaacctcatcctaagtctacgattcaatctaaatcacatctacct
cccttttccagatgttttttgaaccattccactaataatgtgtaatgttatctttgactt
gctatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAAGCTGTGTAATTTAACCGAA 297 421 1505 Antisense
TAACCGAATACTGATTGTTTTTTAT 344 635 1522 Antisense
TAAAATGTAAAATTTCCTCCACTCT 90 639 1552 Antisense
ACTCTCCACCTATCTCATTAAATAT 34 101 1572 Antisense
ATTTTCTGTGACATTTCTCCATCGA 267 15 1595 Antisense
GTGACATTTCTCCATCGAAACTGGT 318 481 1602 Antisense
TTACCCAATGTAAACCTCATCCTAA 127 683 1629 Antisense
AACCTCATCCTAAGTCTACGATTCA 520 147 1641 Antisense
TCAATCTAAATCACATCTACCTCCC 310 633 1663 Antisense
GATGTTTTTTGAACCATTCCACTAA 126 407 1695 Antisense
GTAATGTTATCTTTGACTTGCTATC 149 463 1726 Antisense
Sequence Source Affymetrix Proprietary Database