[Home] | [Total List]

[173735_s_at]

Description AU114106_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T21C9.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU114106 /WB_GENE_ID=T21C9.10 /WP=CE06479 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk715c4 : 3prime end, single read.
Cluster 6grp_total > 65      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 10
(-2.9)
A 		105.5
(2.2)
P 		121.5
(3)
P 		8.3
(-3)
A 		113
B 18.8
(-2.3)
A 		110
(2)
A 		130.9
(3)
A 		2.9
(-3)
A 		128
C 14.7
(-2.5)
A 		127.8
(2.4)
A 		142.8
(3)
P 		2.4
(-3)
A 		140
avr 14.5
(-2.5) 		114.4
(2.2) 		131.7
(3) 		4.5
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 2.8
(-3)
A 		51.6
(1.5)
A 		67.5
(3)
A 		37
(0.2)
A 		3
(-3)
A 		66.4
(2.9)
P 		65
B 27
(-0.9)
P 		66.2
(3)
A 		32.2
(-0.3)
P 		26.4
(-0.9)
A 		5.3
(-3)
A 		63.1
(2.7)
P 		61
C 9
(-3)
A 		44.6
(1.4)
A 		30
(-0.4)
A 		57.1
(3)
A 		14.9
(-2.3)
A 		39.2
(0.8)
A 		48
avr 12.9
(-2.4) 		54.1
(2.7) 		43.2
(1.4) 		40.2
(1) 		7.7
(-3) 		56.2
(3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 3.6
(-2.5)
A 		22.9
(1.3)
P 		31.8
(3)
P 		1.2
(-3)
A 		31
B 6
(-1.9)
A 		27.2
(2.4)
A 		30.3
(3)
A 		0.6
(-3)
A 		30
C 4.9
(-2.5)
A 		36.7
(1.4)
A 		49.8
(3)
P 		0.4
(-3)
A 		49
avr 4.8
(-2.3) 		28.9
(1.6) 		37.3
(3) 		0.7
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 0.5
(-3)
A 		18.4
(3)
A 		14.7
(1.8)
A 		9.4
(-0)
A 		0.9
(-2.9)
A 		16.2
(2.3)
P 		18
B 9.4
(-1)
P 		22
(2.6)
A 		7.8
(-1.4)
P 		7
(-1.6)
A 		2.2
(-3)
A 		23.5
(3)
P 		21
C 3.3
(-3)
A 		13.6
(3)
A 		7.6
(-0.5)
A 		11.5
(1.8)
A 		4.8
(-2.1)
A 		13.1
(2.7)
A 		10
avr 4.4
(-2.3) 		18
(3) 		10
(-0.1) 		9.3
(-0.4) 		2.6
(-3) 		17.6
(2.8) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173735_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25120
Sequence Type Exemplar sequence
Representative Public ID AU114106 NCBI
Target Description AU114106_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T21C9.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU114106 /WB_GENE_ID=T21C9.10 /WP=CE06479 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk715c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073318 NCBI Caenorhabditis elegans T21C9.9 (T21C9.9) mRNA, complete cds. 11/11 None
SNAP00000011989 ENSEMBL cdna:SNAP chromosome:CEL140:V:10593421:10595158:-1 11/11 None
GENEFINDER00000012000 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10593421:10595158:-1 11/11 None
T21C9.9 ENSEMBL cdna:known chromosome:CEL140:V:10593191:10595161:-1 gene:T21C9.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10593201-10593776(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T21C9.9
Entrez Gene 179479 Entrez gene
SwissProt Q22644 EMBL-EBI
WormBase CE35020 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97336 Hypothetical protein T21C9.9 [Caenorhabditis elegans] ref|NP_505719.2| T21C9.9 [Caenorhabditis elegans] 1.0E-172
blast CAE64855 Hypothetical protein CBG09651 [Caenorhabditis briggsae] 1.0E-115
blast T25074 hypothetical protein T21C9.10 - Caenorhabditis elegans 2.0E-38
Sequence
Target Sequence 
>C. ELEGANS:173735_S_AT
agcaaaaactgtggctccagctgcacacgagaacacagaagtggtttacgaagacgagac
tgttgaatatgaagatgatgggcactcagaaacttctgaattaccatcaacaaagaaacc
acagtcggcagaattcaagcgaacagttcaagacaatcaaattcttgttgatgcagctga
aaatacgggagaaggatatcgtcgacgtaatgctgtcaacggagttcgaattgtgaaacg
gtttcgacatgacgagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAAAAACTGTGGCTCCAGCTGCA 70 77 31 Antisense
CTCCAGCTGCACACGAGAACACAGA 613 235 45 Antisense
GTGGTTTACGAAGACGAGACTGTTG 408 489 71 Antisense
GATGATGGGCACTCAGAAACTTCTG 412 411 104 Antisense
GAAACTTCTGAATTACCATCAACAA 226 357 119 Antisense
CATCAACAAAGAAACCACAGTCGGC 634 213 135 Antisense
AACCACAGTCGGCAGAATTCAAGCG 162 149 147 Antisense
AGCGAACAGTTCAAGACAATCAAAT 47 81 168 Antisense
GGATATCGTCGACGTAATGCTGTCA 496 509 224 Antisense
AATGCTGTCAACGGAGTTCGAATTG 681 165 239 Antisense
GAAACGGTTTCGACATGACGAGAGA 501 355 265 Antisense
Sequence Source Affymetrix Proprietary Database