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[173734_at]

Description CEK013G2R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC262.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27558 /WB_GENE_ID=ZC262.3 /WP=CE27345 /CHR=3 /FEA=Genomic Cluster /DEF=N-CAM IG domain; C.elegans cDNA clone yk13g2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 07      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 40      6grp_total > 18      4grp_total > 31      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 742.6
(3)
P 		541.6
(-1.5)
P 		473.4
(-3)
P 		647.2
(0.9)
P 		269
B 522.1
(0.7)
P 		482.7
(-1.5)
P 		455.9
(-3)
P 		562.4
(3)
P 		107
C 723.5
(3)
P 		552
(-3)
P 		616
(-0.8)
P 		565.4
(-2.5)
P 		172
avr 662.7
(3) 		525.4
(-2.6) 		515.1
(-3) 		591.7
(0.1) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 638
1 2 3 4 5 6 range
A 1037
(3)
P 		595.9
(-1.3)
P 		637.2
(-0.9)
P 		445.9
(-2.8)
P 		641.2
(-0.9)
P 		425.4
(-3)
P 		612
B 809.5
(3)
P 		661.9
(-0)
P 		632.9
(-0.6)
P 		750.4
(1.8)
P 		514.5
(-3)
P 		758.3
(2)
P 		295
C 720.7
(3)
P 		678.4
(2.2)
P 		399.3
(-3)
P 		661.9
(1.9)
P 		485.1
(-1.4)
P 		604
(0.8)
P 		321
avr 855.7
(3) 		645.4
(-1.1) 		556.5
(-2.8) 		619.4
(-1.6) 		546.9
(-3) 		595.9
(-2) 		309
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 270.4
(3)
P 		117.6
(-2.2)
P 		123.7
(-2)
P 		94.7
(-3)
P 		176
B 166.5
(3)
P 		119.2
(-1.7)
P 		105.6
(-3)
P 		119.9
(-1.6)
P 		61
C 239.5
(3)
P 		158.7
(-0.4)
P 		214.7
(2)
P 		95.3
(-3)
P 		144
avr 225.5
(3) 		131.8
(-1.6) 		148
(-0.8) 		103.3
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 191.2
(1.9)
P 		211.9
(3)
P 		138.8
(-1)
P 		113.1
(-2.5)
P 		193.5
(2)
P 		103.6
(-3)
P 		108
B 281.7
(2.9)
P 		220.3
(0.1)
P 		153.7
(-3)
P 		198.8
(-0.9)
P 		209
(-0.4)
P 		282.8
(3)
P 		129
C 267.1
(3)
P 		207
(0.8)
P 		101.6
(-3)
P 		133.1
(-1.9)
P 		157
(-1)
P 		202.2
(0.6)
P 		166
avr 246.7
(3) 		213.1
(1.3) 		131.4
(-3) 		148.3
(-2.1) 		186.5
(-0.1) 		196.2
(0.4) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173734_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24352
Sequence Type Exemplar sequence
Representative Public ID CEK013G2R NCBI
Target Description CEK013G2R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC262.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27558 /WB_GENE_ID=ZC262.3 /WP=CE27345 /CHR=3 /FEA=Genomic Cluster /DEF=N-CAM IG domain; C.elegans cDNA clone yk13g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066433(11), NM_066432(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066433 NCBI Caenorhabditis elegans ZC262.3a (ZC262.3) mRNA, complete cds. 11/11 None
NM_066432 NCBI Caenorhabditis elegans ZC262.3b (ZC262.3) mRNA, complete cds. 11/11 None
ZC262.3a ENSEMBL cdna:known chromosome:CEL140:III:8326495:8330862:-1 gene:ZC262.3 11/11 A 
ZC262.3b ENSEMBL cdna:known chromosome:CEL140:III:8326533:8330825:-1 gene:ZC262.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8326501-8331251(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZC262.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29995 Hypothetical protein ZC262.3a [Caenorhabditis elegans] ref|NP_498834.1| ZC262.3a [Caenorhabditis elegans] sp|P34595|YOD3_CAEEL Hypothetical protein ZC262.3 in chromosome III 0.0
blast AAL11102 Hypothetical protein ZC262.3b [Caenorhabditis elegans] ref|NP_498833.1| ZC262.3b [Caenorhabditis elegans] 0.0
blast CAE70161 Hypothetical protein CBG16628 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.3.ARID domain All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain 6.40000009536743
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.16
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.33
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.061
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.9E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498834.1 1 496-518
NP_498833.1 1 496-518
ZC262.3a 1 496-518
ZC262.3b 1 496-518
Sequence
Target Sequence 
>C. ELEGANS:173734_AT
aatcattttgtttgtttgtctataaccattccaaaatcggtgccatcatcatccgaccta
tcatttctttttgcaattagtcctaaaacacttacttaccatcttcaggaataatgttct
caactagagctttgtttttttcttttcgagagtgtctttaatatatctttccaattcaat
tgtttcatgccaggaaatccatgcaaacttctcccccaattcccactttttgttccaaat
ttcatgtgttcattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCATTTTGTTTGTTTGTCTATAA 167 171 2595 Antisense
TTGTCTATAACCATTCCAAAATCGG 45 701 2610 Antisense
AAATCGGTGCCATCATCATCCGACC 620 117 2628 Antisense
ATCATCCGACCTATCATTTCTTTTT 70 31 2642 Antisense
TCATTTCTTTTTGCAATTAGTCCTA 23 619 2655 Antisense
AAAACACTTACTTACCATCTTCAGG 580 129 2679 Antisense
TGTTCTCAACTAGAGCTTTGTTTTT 30 563 2709 Antisense
GAGAGTGTCTTTAATATATCTTTCC 36 397 2742 Antisense
CCAATTCAATTGTTTCATGCCAGGA 137 277 2765 Antisense
CAGGAAATCCATGCAAACTTCTCCC 354 209 2785 Antisense
GTTCCAAATTTCATGTGTTCATTTA 352 441 2826 Antisense
Sequence Source Affymetrix Proprietary Database